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ZNF679 (zinc finger protein 679)

Identity

Alias_symbol (synonym)MGC42415
Other alias-
HGNC (Hugo) ZNF679
LocusID (NCBI) 168417
Atlas_Id 76328
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 64228474 and ends at 64266931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF679 (7q11.21) / VOPP1 (7p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF679   28650
Cards
Entrez_Gene (NCBI)ZNF679  168417  zinc finger protein 679
Aliases
GeneCards (Weizmann)ZNF679
Ensembl hg19 (Hinxton)ENSG00000197123 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197123 [Gene_View]  chr7:64228474-64266931 [Contig_View]  ZNF679 [Vega]
ICGC DataPortalENSG00000197123
TCGA cBioPortalZNF679
AceView (NCBI)ZNF679
Genatlas (Paris)ZNF679
WikiGenes168417
SOURCE (Princeton)ZNF679
Genetics Home Reference (NIH)ZNF679
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF679  -     chr7:64228474-64266931 +  7q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF679  -     7q11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF679 - 7q11.21 [CytoView hg19]  ZNF679 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF679 [Mapview hg19]  ZNF679 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033523
RefSeq transcript (Entrez)NM_153363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF679
Cluster EST : UnigeneHs.520884 [ NCBI ]
CGAP (NCI)Hs.520884
Alternative Splicing GalleryENSG00000197123
Gene ExpressionZNF679 [ NCBI-GEO ]   ZNF679 [ EBI - ARRAY_EXPRESS ]   ZNF679 [ SEEK ]   ZNF679 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF679 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168417
GTEX Portal (Tissue expression)ZNF679
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYX0
Splice isoforms : SwissVarQ8IYX0
PhosPhoSitePlusQ8IYX0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF679
DMDM Disease mutations168417
Blocks (Seattle)ZNF679
SuperfamilyQ8IYX0
Human Protein AtlasENSG00000197123
Peptide AtlasQ8IYX0
HPRD14621
IPIIPI00472494   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYX0
IntAct (EBI)Q8IYX0
FunCoupENSG00000197123
BioGRIDZNF679
STRING (EMBL)ZNF679
ZODIACZNF679
Ontologies - Pathways
QuickGOQ8IYX0
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF679
Atlas of Cancer Signalling NetworkZNF679
Wikipedia pathwaysZNF679
Orthology - Evolution
OrthoDB168417
GeneTree (enSembl)ENSG00000197123
Phylogenetic Trees/Animal Genes : TreeFamZNF679
HOVERGENQ8IYX0
HOGENOMQ8IYX0
Homologs : HomoloGeneZNF679
Homology/Alignments : Family Browser (UCSC)ZNF679
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF679 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF679
dbVarZNF679
ClinVarZNF679
1000_GenomesZNF679 
Exome Variant ServerZNF679
ExAC (Exome Aggregation Consortium)ZNF679 (select the gene name)
Genetic variants : HAPMAP168417
Genomic Variants (DGV)ZNF679 [DGVbeta]
DECIPHERZNF679 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF679 
Mutations
ICGC Data PortalZNF679 
TCGA Data PortalZNF679 
Broad Tumor PortalZNF679
OASIS PortalZNF679 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF679  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF679
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF679
DgiDB (Drug Gene Interaction Database)ZNF679
DoCM (Curated mutations)ZNF679 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF679 (select a term)
intoGenZNF679
Cancer3DZNF679(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF679
Genetic Testing Registry ZNF679
NextProtQ8IYX0 [Medical]
TSGene168417
GENETestsZNF679
Target ValidationZNF679
Huge Navigator ZNF679 [HugePedia]
snp3D : Map Gene to Disease168417
BioCentury BCIQZNF679
ClinGenZNF679
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168417
Chemical/Pharm GKB GenePA142670480
Clinical trialZNF679
Miscellaneous
canSAR (ICR)ZNF679 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF679
EVEXZNF679
GoPubMedZNF679
iHOPZNF679
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:02 CEST 2017

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