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ZNF680 (zinc finger protein 680)

Identity

Alias_symbol (synonym)FLJ90430
Other alias-
HGNC (Hugo) ZNF680
LocusID (NCBI) 340252
Atlas_Id 76329
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 64524656 and ends at 64563127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF680 (7q11.21) / SNAP91 (6q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF680   26897
Cards
Entrez_Gene (NCBI)ZNF680  340252  zinc finger protein 680
Aliases
GeneCards (Weizmann)ZNF680
Ensembl hg19 (Hinxton)ENSG00000173041 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173041 [Gene_View]  chr7:64524656-64563127 [Contig_View]  ZNF680 [Vega]
ICGC DataPortalENSG00000173041
TCGA cBioPortalZNF680
AceView (NCBI)ZNF680
Genatlas (Paris)ZNF680
WikiGenes340252
SOURCE (Princeton)ZNF680
Genetics Home Reference (NIH)ZNF680
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF680  -     chr7:64524656-64563127 -  7q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF680  -     7q11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF680 - 7q11.21 [CytoView hg19]  ZNF680 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF680 [Mapview hg19]  ZNF680 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074911 AK122937 AK131240 BC030700 DA669757
RefSeq transcript (Entrez)NM_001130022 NM_178558
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF680
Cluster EST : UnigeneHs.520886 [ NCBI ]
CGAP (NCI)Hs.520886
Alternative Splicing GalleryENSG00000173041
Gene ExpressionZNF680 [ NCBI-GEO ]   ZNF680 [ EBI - ARRAY_EXPRESS ]   ZNF680 [ SEEK ]   ZNF680 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF680 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340252
GTEX Portal (Tissue expression)ZNF680
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEM1
Splice isoforms : SwissVarQ8NEM1
PhosPhoSitePlusQ8NEM1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF680
DMDM Disease mutations340252
Blocks (Seattle)ZNF680
SuperfamilyQ8NEM1
Human Protein AtlasENSG00000173041
Peptide AtlasQ8NEM1
HPRD08296
IPIIPI00168690   IPI00442319   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEM1
IntAct (EBI)Q8NEM1
FunCoupENSG00000173041
BioGRIDZNF680
STRING (EMBL)ZNF680
ZODIACZNF680
Ontologies - Pathways
QuickGOQ8NEM1
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF680
Atlas of Cancer Signalling NetworkZNF680
Wikipedia pathwaysZNF680
Orthology - Evolution
OrthoDB340252
GeneTree (enSembl)ENSG00000173041
Phylogenetic Trees/Animal Genes : TreeFamZNF680
HOVERGENQ8NEM1
HOGENOMQ8NEM1
Homologs : HomoloGeneZNF680
Homology/Alignments : Family Browser (UCSC)ZNF680
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF680 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF680
dbVarZNF680
ClinVarZNF680
1000_GenomesZNF680 
Exome Variant ServerZNF680
ExAC (Exome Aggregation Consortium)ZNF680 (select the gene name)
Genetic variants : HAPMAP340252
Genomic Variants (DGV)ZNF680 [DGVbeta]
DECIPHERZNF680 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF680 
Mutations
ICGC Data PortalZNF680 
TCGA Data PortalZNF680 
Broad Tumor PortalZNF680
OASIS PortalZNF680 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF680  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF680
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF680
DgiDB (Drug Gene Interaction Database)ZNF680
DoCM (Curated mutations)ZNF680 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF680 (select a term)
intoGenZNF680
Cancer3DZNF680(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF680
Genetic Testing Registry ZNF680
NextProtQ8NEM1 [Medical]
TSGene340252
GENETestsZNF680
Target ValidationZNF680
Huge Navigator ZNF680 [HugePedia]
snp3D : Map Gene to Disease340252
BioCentury BCIQZNF680
ClinGenZNF680
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340252
Chemical/Pharm GKB GenePA142670481
Clinical trialZNF680
Miscellaneous
canSAR (ICR)ZNF680 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF680
EVEXZNF680
GoPubMedZNF680
iHOPZNF680
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:02 CEST 2017

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