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ZNF682 (zinc finger protein 682)

Identity

Alias_symbol (synonym)BC39498_3
Other alias
HGNC (Hugo) ZNF682
LocusID (NCBI) 91120
Atlas_Id 76331
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 20004418 and ends at 20039255 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RUNX3 (1p36.11) / ZNF682 (19p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF682   28857
Cards
Entrez_Gene (NCBI)ZNF682  91120  zinc finger protein 682
AliasesBC39498_3
GeneCards (Weizmann)ZNF682
Ensembl hg19 (Hinxton)ENSG00000197124 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197124 [Gene_View]  chr19:20004418-20039255 [Contig_View]  ZNF682 [Vega]
ICGC DataPortalENSG00000197124
TCGA cBioPortalZNF682
AceView (NCBI)ZNF682
Genatlas (Paris)ZNF682
WikiGenes91120
SOURCE (Princeton)ZNF682
Genetics Home Reference (NIH)ZNF682
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF682  -     chr19:20004418-20039255 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF682  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF682 - 19p12 [CytoView hg19]  ZNF682 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF682 [Mapview hg19]  ZNF682 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027845 AK074843 AK096571 AK098164 AK127015
RefSeq transcript (Entrez)NM_001077349 NM_033196
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF682
Cluster EST : UnigeneHs.306298 [ NCBI ]
CGAP (NCI)Hs.306298
Alternative Splicing GalleryENSG00000197124
Gene ExpressionZNF682 [ NCBI-GEO ]   ZNF682 [ EBI - ARRAY_EXPRESS ]   ZNF682 [ SEEK ]   ZNF682 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF682 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91120
GTEX Portal (Tissue expression)ZNF682
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95780   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95780  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95780
Splice isoforms : SwissVarO95780
PhosPhoSitePlusO95780
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF682
DMDM Disease mutations91120
Blocks (Seattle)ZNF682
SuperfamilyO95780
Human Protein AtlasENSG00000197124
Peptide AtlasO95780
HPRD14282
IPIIPI00034336   IPI01012728   IPI00747886   
Protein Interaction databases
DIP (DOE-UCLA)O95780
IntAct (EBI)O95780
FunCoupENSG00000197124
BioGRIDZNF682
STRING (EMBL)ZNF682
ZODIACZNF682
Ontologies - Pathways
QuickGOO95780
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF682
Atlas of Cancer Signalling NetworkZNF682
Wikipedia pathwaysZNF682
Orthology - Evolution
OrthoDB91120
GeneTree (enSembl)ENSG00000197124
Phylogenetic Trees/Animal Genes : TreeFamZNF682
HOVERGENO95780
HOGENOMO95780
Homologs : HomoloGeneZNF682
Homology/Alignments : Family Browser (UCSC)ZNF682
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF682 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF682
dbVarZNF682
ClinVarZNF682
1000_GenomesZNF682 
Exome Variant ServerZNF682
ExAC (Exome Aggregation Consortium)ZNF682 (select the gene name)
Genetic variants : HAPMAP91120
Genomic Variants (DGV)ZNF682 [DGVbeta]
DECIPHERZNF682 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF682 
Mutations
ICGC Data PortalZNF682 
TCGA Data PortalZNF682 
Broad Tumor PortalZNF682
OASIS PortalZNF682 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF682  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF682
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF682
DgiDB (Drug Gene Interaction Database)ZNF682
DoCM (Curated mutations)ZNF682 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF682 (select a term)
intoGenZNF682
Cancer3DZNF682(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF682
Genetic Testing Registry ZNF682
NextProtO95780 [Medical]
TSGene91120
GENETestsZNF682
Target ValidationZNF682
Huge Navigator ZNF682 [HugePedia]
snp3D : Map Gene to Disease91120
BioCentury BCIQZNF682
ClinGenZNF682
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91120
Chemical/Pharm GKB GenePA142670483
Clinical trialZNF682
Miscellaneous
canSAR (ICR)ZNF682 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF682
EVEXZNF682
GoPubMedZNF682
iHOPZNF682
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:03 CEST 2017

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