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ZNF682 (zinc finger protein 682)

Identity

Alias (NCBI)BC39498_3
HGNC (Hugo) ZNF682
HGNC Alias symbBC39498_3
LocusID (NCBI) 91120
Atlas_Id 76331
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 20004418 and ends at 20039505 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RUNX3 (1p36.11)::ZNF682 (19p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF682   28857
Cards
Entrez_Gene (NCBI)ZNF682    zinc finger protein 682
AliasesBC39498_3
GeneCards (Weizmann)ZNF682
Ensembl hg19 (Hinxton)ENSG00000197124 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197124 [Gene_View]  ENSG00000197124 [Sequence]  chr19:20004418-20039505 [Contig_View]  ZNF682 [Vega]
ICGC DataPortalENSG00000197124
TCGA cBioPortalZNF682
AceView (NCBI)ZNF682
Genatlas (Paris)ZNF682
SOURCE (Princeton)ZNF682
Genetics Home Reference (NIH)ZNF682
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF682  -     chr19:20004418-20039505 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF682  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF682 - 19p12 [CytoView hg19]  ZNF682 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000197124
Genome Data Viewer NCBIZNF682 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027845 AK074843 AK096571 AK098164 AK127015
RefSeq transcript (Entrez)NM_001077349 NM_033196
Consensus coding sequences : CCDS (NCBI)ZNF682
Gene ExpressionZNF682 [ NCBI-GEO ]   ZNF682 [ EBI - ARRAY_EXPRESS ]   ZNF682 [ SEEK ]   ZNF682 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF682 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF682 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91120
GTEX Portal (Tissue expression)ZNF682
Human Protein AtlasENSG00000197124-ZNF682 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95780   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95780  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95780
PhosPhoSitePlusO95780
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF682
SuperfamilyO95780
AlphaFold pdb e-kbO95780   
Human Protein Atlas [tissue]ENSG00000197124-ZNF682 [tissue]
HPRD14282
Protein Interaction databases
DIP (DOE-UCLA)O95780
IntAct (EBI)O95780
BioGRIDZNF682
STRING (EMBL)ZNF682
ZODIACZNF682
Ontologies - Pathways
QuickGOO95780
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF682
Atlas of Cancer Signalling NetworkZNF682
Wikipedia pathwaysZNF682
Orthology - Evolution
OrthoDB91120
GeneTree (enSembl)ENSG00000197124
Phylogenetic Trees/Animal Genes : TreeFamZNF682
Homologs : HomoloGeneZNF682
Homology/Alignments : Family Browser (UCSC)ZNF682
Gene fusions - Rearrangements
Fusion : QuiverZNF682
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF682 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF682
dbVarZNF682
ClinVarZNF682
MonarchZNF682
1000_GenomesZNF682 
Exome Variant ServerZNF682
GNOMAD BrowserENSG00000197124
Varsome BrowserZNF682
ACMGZNF682 variants
VarityO95780
Genomic Variants (DGV)ZNF682 [DGVbeta]
DECIPHERZNF682 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF682 
Mutations
ICGC Data PortalZNF682 
TCGA Data PortalZNF682 
Broad Tumor PortalZNF682
OASIS PortalZNF682 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF682  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF682
Mutations and Diseases : HGMDZNF682
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF682
DgiDB (Drug Gene Interaction Database)ZNF682
DoCM (Curated mutations)ZNF682
CIViC (Clinical Interpretations of Variants in Cancer)ZNF682
Cancer3DZNF682
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF682
MedgenZNF682
Genetic Testing Registry ZNF682
NextProtO95780 [Medical]
GENETestsZNF682
Target ValidationZNF682
Huge Navigator ZNF682 [HugePedia]
ClinGenZNF682
Clinical trials, drugs, therapy
MyCancerGenomeZNF682
Protein Interactions : CTDZNF682
Pharm GKB GenePA142670483
PharosO95780
Clinical trialZNF682
Miscellaneous
canSAR (ICR)ZNF682
HarmonizomeZNF682
ARCHS4ZNF682
DataMed IndexZNF682
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF682
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 14:00:18 CET 2022

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