Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF683 (zinc finger protein 683)

Identity

Alias_symbol (synonym)MGC33414
Hobit
Other alias
HGNC (Hugo) ZNF683
LocusID (NCBI) 257101
Atlas_Id 76332
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26361634 and ends at 26372794 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF683   28495
Cards
Entrez_Gene (NCBI)ZNF683  257101  zinc finger protein 683
AliasesHobit
GeneCards (Weizmann)ZNF683
Ensembl hg19 (Hinxton)ENSG00000176083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176083 [Gene_View]  chr1:26361634-26372794 [Contig_View]  ZNF683 [Vega]
ICGC DataPortalENSG00000176083
TCGA cBioPortalZNF683
AceView (NCBI)ZNF683
Genatlas (Paris)ZNF683
WikiGenes257101
SOURCE (Princeton)ZNF683
Genetics Home Reference (NIH)ZNF683
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF683  -     chr1:26361634-26372794 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF683  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblZNF683 - 1p36.11 [CytoView hg19]  ZNF683 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIZNF683 [Mapview hg19]  ZNF683 [Mapview hg38]
OMIM616775   
Gene and transcription
Genbank (Entrez)BC028731 BC029505 BI465178 DB444885 EU446597
RefSeq transcript (Entrez)NM_001114759 NM_001307925 NM_173574
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF683
Cluster EST : UnigeneHs.353208 [ NCBI ]
CGAP (NCI)Hs.353208
Alternative Splicing GalleryENSG00000176083
Gene ExpressionZNF683 [ NCBI-GEO ]   ZNF683 [ EBI - ARRAY_EXPRESS ]   ZNF683 [ SEEK ]   ZNF683 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF683 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257101
GTEX Portal (Tissue expression)ZNF683
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ20
Splice isoforms : SwissVarQ8IZ20
PhosPhoSitePlusQ8IZ20
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF683
DMDM Disease mutations257101
Blocks (Seattle)ZNF683
SuperfamilyQ8IZ20
Human Protein AtlasENSG00000176083
Peptide AtlasQ8IZ20
HPRD14563
IPIIPI00176335   IPI00335135   IPI00514918   IPI00643710   IPI00643116   IPI00514827   IPI00646091   IPI00894150   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ20
IntAct (EBI)Q8IZ20
FunCoupENSG00000176083
BioGRIDZNF683
STRING (EMBL)ZNF683
ZODIACZNF683
Ontologies - Pathways
QuickGOQ8IZ20
Ontology : AmiGOnatural killer cell differentiation  adaptive immune response  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of gene expression  regulation of natural killer cell differentiation  regulation of natural killer cell differentiation involved in immune response  regulation of extrathymic T cell differentiation  innate immune response  metal ion binding  regulation of NK T cell differentiation  promoter-specific chromatin binding  
Ontology : EGO-EBInatural killer cell differentiation  adaptive immune response  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of gene expression  regulation of natural killer cell differentiation  regulation of natural killer cell differentiation involved in immune response  regulation of extrathymic T cell differentiation  innate immune response  metal ion binding  regulation of NK T cell differentiation  promoter-specific chromatin binding  
NDEx NetworkZNF683
Atlas of Cancer Signalling NetworkZNF683
Wikipedia pathwaysZNF683
Orthology - Evolution
OrthoDB257101
GeneTree (enSembl)ENSG00000176083
Phylogenetic Trees/Animal Genes : TreeFamZNF683
HOVERGENQ8IZ20
HOGENOMQ8IZ20
Homologs : HomoloGeneZNF683
Homology/Alignments : Family Browser (UCSC)ZNF683
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF683 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF683
dbVarZNF683
ClinVarZNF683
1000_GenomesZNF683 
Exome Variant ServerZNF683
ExAC (Exome Aggregation Consortium)ZNF683 (select the gene name)
Genetic variants : HAPMAP257101
Genomic Variants (DGV)ZNF683 [DGVbeta]
DECIPHERZNF683 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF683 
Mutations
ICGC Data PortalZNF683 
TCGA Data PortalZNF683 
Broad Tumor PortalZNF683
OASIS PortalZNF683 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF683  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF683
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF683
DgiDB (Drug Gene Interaction Database)ZNF683
DoCM (Curated mutations)ZNF683 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF683 (select a term)
intoGenZNF683
Cancer3DZNF683(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616775   
Orphanet
MedgenZNF683
Genetic Testing Registry ZNF683
NextProtQ8IZ20 [Medical]
TSGene257101
GENETestsZNF683
Huge Navigator ZNF683 [HugePedia]
snp3D : Map Gene to Disease257101
BioCentury BCIQZNF683
ClinGenZNF683
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257101
Chemical/Pharm GKB GenePA142670484
Clinical trialZNF683
Miscellaneous
canSAR (ICR)ZNF683 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF683
EVEXZNF683
GoPubMedZNF683
iHOPZNF683
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:03:36 CEST 2017

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