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ZNF688 (zinc finger protein 688)

Identity

Other alias-
HGNC (Hugo) ZNF688
LocusID (NCBI) 146542
Atlas_Id 76333
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30581019 and ends at 30583728 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF688   30489
Cards
Entrez_Gene (NCBI)ZNF688  146542  zinc finger protein 688
Aliases
GeneCards (Weizmann)ZNF688
Ensembl hg19 (Hinxton) [Gene_View]  chr16:30581019-30583728 [Contig_View]  ZNF688 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:30581019-30583728 [Contig_View]  ZNF688 [Vega]
TCGA cBioPortalZNF688
AceView (NCBI)ZNF688
Genatlas (Paris)ZNF688
WikiGenes146542
SOURCE (Princeton)ZNF688
Genetics Home Reference (NIH)ZNF688
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF688  -     chr16:30581019-30583728 -  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF688  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblZNF688 - 16p11.2 [CytoView hg19]  ZNF688 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF688 [Mapview hg19]  ZNF688 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085979 AK122680 BC018997 BM011208 BQ188280
RefSeq transcript (Entrez)NM_001024683 NM_145271
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)ZNF688
Cluster EST : UnigeneHs.301463 [ NCBI ]
CGAP (NCI)Hs.301463
Gene ExpressionZNF688 [ NCBI-GEO ]   ZNF688 [ EBI - ARRAY_EXPRESS ]   ZNF688 [ SEEK ]   ZNF688 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF688 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146542
GTEX Portal (Tissue expression)ZNF688
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7X2
Splice isoforms : SwissVarP0C7X2
PhosPhoSitePlusP0C7X2
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF688
DMDM Disease mutations146542
Blocks (Seattle)ZNF688
SuperfamilyP0C7X2
Peptide AtlasP0C7X2
HPRD14070
IPIIPI00158506   IPI00607757   
Protein Interaction databases
DIP (DOE-UCLA)P0C7X2
IntAct (EBI)P0C7X2
BioGRIDZNF688
STRING (EMBL)ZNF688
ZODIACZNF688
Ontologies - Pathways
QuickGOP0C7X2
Ontology : AmiGOmolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF688
Atlas of Cancer Signalling NetworkZNF688
Wikipedia pathwaysZNF688
Orthology - Evolution
OrthoDB146542
Phylogenetic Trees/Animal Genes : TreeFamZNF688
HOVERGENP0C7X2
HOGENOMP0C7X2
Homologs : HomoloGeneZNF688
Homology/Alignments : Family Browser (UCSC)ZNF688
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF688 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF688
dbVarZNF688
ClinVarZNF688
1000_GenomesZNF688 
Exome Variant ServerZNF688
ExAC (Exome Aggregation Consortium)ZNF688 (select the gene name)
Genetic variants : HAPMAP146542
Genomic Variants (DGV)ZNF688 [DGVbeta]
DECIPHER (Syndromes)16:30581019-30583728  
CONAN: Copy Number AnalysisZNF688 
Mutations
ICGC Data PortalZNF688 
TCGA Data PortalZNF688 
Broad Tumor PortalZNF688
OASIS PortalZNF688 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF688  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF688
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF688
DgiDB (Drug Gene Interaction Database)ZNF688
DoCM (Curated mutations)ZNF688 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF688 (select a term)
intoGenZNF688
Cancer3DZNF688(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF688
Genetic Testing Registry ZNF688
NextProtP0C7X2 [Medical]
TSGene146542
GENETestsZNF688
Huge Navigator ZNF688 [HugePedia]
snp3D : Map Gene to Disease146542
BioCentury BCIQZNF688
ClinGenZNF688
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146542
Chemical/Pharm GKB GenePA142670487
Clinical trialZNF688
Miscellaneous
canSAR (ICR)ZNF688 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF688
EVEXZNF688
GoPubMedZNF688
iHOPZNF688
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:39 CET 2017

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