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ZNF689 (zinc finger protein 689)

Identity

Alias_symbol (synonym)FLJ90415
Other aliasTIPUH1
HGNC (Hugo) ZNF689
LocusID (NCBI) 115509
Atlas_Id 46271
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30602558 and ends at 30610386 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF689   25173
Cards
Entrez_Gene (NCBI)ZNF689  115509  zinc finger protein 689
AliasesTIPUH1
GeneCards (Weizmann)ZNF689
Ensembl hg19 (Hinxton)ENSG00000156853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156853 [Gene_View]  chr16:30602558-30610386 [Contig_View]  ZNF689 [Vega]
ICGC DataPortalENSG00000156853
TCGA cBioPortalZNF689
AceView (NCBI)ZNF689
Genatlas (Paris)ZNF689
WikiGenes115509
SOURCE (Princeton)ZNF689
Genetics Home Reference (NIH)ZNF689
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF689  -     chr16:30602558-30610386 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF689  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF689 - 16p11.2 [CytoView hg19]  ZNF689 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF689 [Mapview hg19]  ZNF689 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB065282 AF086510 AK074896 AK310459 AL834299
RefSeq transcript (Entrez)NM_138447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF689
Cluster EST : UnigeneHs.454685 [ NCBI ]
CGAP (NCI)Hs.454685
Alternative Splicing GalleryENSG00000156853
Gene ExpressionZNF689 [ NCBI-GEO ]   ZNF689 [ EBI - ARRAY_EXPRESS ]   ZNF689 [ SEEK ]   ZNF689 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF689 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115509
GTEX Portal (Tissue expression)ZNF689
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CS4
Splice isoforms : SwissVarQ96CS4
PhosPhoSitePlusQ96CS4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF689
DMDM Disease mutations115509
Blocks (Seattle)ZNF689
SuperfamilyQ96CS4
Human Protein AtlasENSG00000156853
Peptide AtlasQ96CS4
HPRD14009
IPIIPI00073580   IPI01010455   
Protein Interaction databases
DIP (DOE-UCLA)Q96CS4
IntAct (EBI)Q96CS4
FunCoupENSG00000156853
BioGRIDZNF689
STRING (EMBL)ZNF689
ZODIACZNF689
Ontologies - Pathways
QuickGOQ96CS4
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  skeletal muscle cell differentiation  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  skeletal muscle cell differentiation  metal ion binding  
NDEx NetworkZNF689
Atlas of Cancer Signalling NetworkZNF689
Wikipedia pathwaysZNF689
Orthology - Evolution
OrthoDB115509
GeneTree (enSembl)ENSG00000156853
Phylogenetic Trees/Animal Genes : TreeFamZNF689
HOVERGENQ96CS4
HOGENOMQ96CS4
Homologs : HomoloGeneZNF689
Homology/Alignments : Family Browser (UCSC)ZNF689
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF689 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF689
dbVarZNF689
ClinVarZNF689
1000_GenomesZNF689 
Exome Variant ServerZNF689
ExAC (Exome Aggregation Consortium)ZNF689 (select the gene name)
Genetic variants : HAPMAP115509
Genomic Variants (DGV)ZNF689 [DGVbeta]
DECIPHERZNF689 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF689 
Mutations
ICGC Data PortalZNF689 
TCGA Data PortalZNF689 
Broad Tumor PortalZNF689
OASIS PortalZNF689 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF689  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF689
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF689
DgiDB (Drug Gene Interaction Database)ZNF689
DoCM (Curated mutations)ZNF689 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF689 (select a term)
intoGenZNF689
Cancer3DZNF689(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF689
Genetic Testing Registry ZNF689
NextProtQ96CS4 [Medical]
TSGene115509
GENETestsZNF689
Target ValidationZNF689
Huge Navigator ZNF689 [HugePedia]
snp3D : Map Gene to Disease115509
BioCentury BCIQZNF689
ClinGenZNF689
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115509
Chemical/Pharm GKB GenePA142670488
Clinical trialZNF689
Miscellaneous
canSAR (ICR)ZNF689 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF689
EVEXZNF689
GoPubMedZNF689
iHOPZNF689
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:35 CEST 2017

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