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ZNF689 (zinc finger protein 689)

Identity

Alias (NCBI)TIPUH1
HGNC (Hugo) ZNF689
HGNC Alias symbFLJ90415
TIPUH1
LocusID (NCBI) 115509
Atlas_Id 46271
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30602558 and ends at 30610389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF689   25173
Cards
Entrez_Gene (NCBI)ZNF689    zinc finger protein 689
AliasesTIPUH1
GeneCards (Weizmann)ZNF689
Ensembl hg19 (Hinxton)ENSG00000156853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156853 [Gene_View]  ENSG00000156853 [Sequence]  chr16:30602558-30610389 [Contig_View]  ZNF689 [Vega]
ICGC DataPortalENSG00000156853
TCGA cBioPortalZNF689
AceView (NCBI)ZNF689
Genatlas (Paris)ZNF689
SOURCE (Princeton)ZNF689
Genetics Home Reference (NIH)ZNF689
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF689  -     chr16:30602558-30610389 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF689  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF689 - 16p11.2 [CytoView hg19]  ZNF689 - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000156853
Genome Data Viewer NCBIZNF689 [Mapview hg19]  
OMIM618033   
Gene and transcription
Genbank (Entrez)AB065282 AF086510 AK074896 AK310459 AL834299
RefSeq transcript (Entrez)NM_138447
Consensus coding sequences : CCDS (NCBI)ZNF689
Gene ExpressionZNF689 [ NCBI-GEO ]   ZNF689 [ EBI - ARRAY_EXPRESS ]   ZNF689 [ SEEK ]   ZNF689 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF689 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF689 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115509
GTEX Portal (Tissue expression)ZNF689
Human Protein AtlasENSG00000156853-ZNF689 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CS4
PhosPhoSitePlusQ96CS4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF689
SuperfamilyQ96CS4
AlphaFold pdb e-kbQ96CS4   
Human Protein Atlas [tissue]ENSG00000156853-ZNF689 [tissue]
HPRD14009
Protein Interaction databases
DIP (DOE-UCLA)Q96CS4
IntAct (EBI)Q96CS4
BioGRIDZNF689
STRING (EMBL)ZNF689
ZODIACZNF689
Ontologies - Pathways
QuickGOQ96CS4
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  skeletal muscle cell differentiation  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  skeletal muscle cell differentiation  metal ion binding  
NDEx NetworkZNF689
Atlas of Cancer Signalling NetworkZNF689
Wikipedia pathwaysZNF689
Orthology - Evolution
OrthoDB115509
GeneTree (enSembl)ENSG00000156853
Phylogenetic Trees/Animal Genes : TreeFamZNF689
Homologs : HomoloGeneZNF689
Homology/Alignments : Family Browser (UCSC)ZNF689
Gene fusions - Rearrangements
Fusion : QuiverZNF689
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF689 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF689
dbVarZNF689
ClinVarZNF689
MonarchZNF689
1000_GenomesZNF689 
Exome Variant ServerZNF689
GNOMAD BrowserENSG00000156853
Varsome BrowserZNF689
ACMGZNF689 variants
VarityQ96CS4
Genomic Variants (DGV)ZNF689 [DGVbeta]
DECIPHERZNF689 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF689 
Mutations
ICGC Data PortalZNF689 
TCGA Data PortalZNF689 
Broad Tumor PortalZNF689
OASIS PortalZNF689 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF689  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF689
Mutations and Diseases : HGMDZNF689
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF689
DgiDB (Drug Gene Interaction Database)ZNF689
DoCM (Curated mutations)ZNF689
CIViC (Clinical Interpretations of Variants in Cancer)ZNF689
Cancer3DZNF689
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618033   
Orphanet
DisGeNETZNF689
MedgenZNF689
Genetic Testing Registry ZNF689
NextProtQ96CS4 [Medical]
GENETestsZNF689
Target ValidationZNF689
Huge Navigator ZNF689 [HugePedia]
ClinGenZNF689
Clinical trials, drugs, therapy
MyCancerGenomeZNF689
Protein Interactions : CTDZNF689
Pharm GKB GenePA142670488
PharosQ96CS4
Clinical trialZNF689
Miscellaneous
canSAR (ICR)ZNF689
HarmonizomeZNF689
DataMed IndexZNF689
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF689
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:39:26 CEST 2021

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