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ZNF69 (zinc finger protein 69)

Identity

Alias_nameszinc finger protein 69 (Cos5)
Alias_symbol (synonym)Cos5
Other aliashZNF3
HGNC (Hugo) ZNF69
LocusID (NCBI) 7620
Atlas_Id 76334
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11887784 and ends at 11914550 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF69 (19p13.2) / AP3D1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF69   13138
Cards
Entrez_Gene (NCBI)ZNF69  7620  zinc finger protein 69
AliasesCos5; hZNF3
GeneCards (Weizmann)ZNF69
Ensembl hg19 (Hinxton)ENSG00000198429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198429 [Gene_View]  chr19:11887784-11914550 [Contig_View]  ZNF69 [Vega]
ICGC DataPortalENSG00000198429
TCGA cBioPortalZNF69
AceView (NCBI)ZNF69
Genatlas (Paris)ZNF69
WikiGenes7620
SOURCE (Princeton)ZNF69
Genetics Home Reference (NIH)ZNF69
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF69  -     chr19:11887784-11914550 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF69  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF69 - 19p13.2 [CytoView hg19]  ZNF69 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF69 [Mapview hg19]  ZNF69 [Mapview hg38]
OMIM194543   
Gene and transcription
Genbank (Entrez)AK001669 AK123536 AW132096 BC051309 BG393583
RefSeq transcript (Entrez)NM_001321163 NM_021915
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF69
Cluster EST : UnigeneHs.735590 [ NCBI ]
CGAP (NCI)Hs.735590
Alternative Splicing GalleryENSG00000198429
Gene ExpressionZNF69 [ NCBI-GEO ]   ZNF69 [ EBI - ARRAY_EXPRESS ]   ZNF69 [ SEEK ]   ZNF69 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF69 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7620
GTEX Portal (Tissue expression)ZNF69
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UC07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UC07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UC07
Splice isoforms : SwissVarQ9UC07
PhosPhoSitePlusQ9UC07
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF69
DMDM Disease mutations7620
Blocks (Seattle)ZNF69
SuperfamilyQ9UC07
Human Protein AtlasENSG00000198429
Peptide AtlasQ9UC07
HPRD11836
IPIIPI00473033   IPI00739886   IPI00925398   
Protein Interaction databases
DIP (DOE-UCLA)Q9UC07
IntAct (EBI)Q9UC07
FunCoupENSG00000198429
BioGRIDZNF69
STRING (EMBL)ZNF69
ZODIACZNF69
Ontologies - Pathways
QuickGOQ9UC07
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF69
Atlas of Cancer Signalling NetworkZNF69
Wikipedia pathwaysZNF69
Orthology - Evolution
OrthoDB7620
GeneTree (enSembl)ENSG00000198429
Phylogenetic Trees/Animal Genes : TreeFamZNF69
HOVERGENQ9UC07
HOGENOMQ9UC07
Homologs : HomoloGeneZNF69
Homology/Alignments : Family Browser (UCSC)ZNF69
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF69 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF69
dbVarZNF69
ClinVarZNF69
1000_GenomesZNF69 
Exome Variant ServerZNF69
ExAC (Exome Aggregation Consortium)ZNF69 (select the gene name)
Genetic variants : HAPMAP7620
Genomic Variants (DGV)ZNF69 [DGVbeta]
DECIPHERZNF69 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF69 
Mutations
ICGC Data PortalZNF69 
TCGA Data PortalZNF69 
Broad Tumor PortalZNF69
OASIS PortalZNF69 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF69  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF69
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF69
DgiDB (Drug Gene Interaction Database)ZNF69
DoCM (Curated mutations)ZNF69 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF69 (select a term)
intoGenZNF69
Cancer3DZNF69(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194543   
Orphanet
MedgenZNF69
Genetic Testing Registry ZNF69
NextProtQ9UC07 [Medical]
TSGene7620
GENETestsZNF69
Target ValidationZNF69
Huge Navigator ZNF69 [HugePedia]
snp3D : Map Gene to Disease7620
BioCentury BCIQZNF69
ClinGenZNF69
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7620
Chemical/Pharm GKB GenePA37712
Clinical trialZNF69
Miscellaneous
canSAR (ICR)ZNF69 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF69
EVEXZNF69
GoPubMedZNF69
iHOPZNF69
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:10 CEST 2017

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