Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF7 (zinc finger protein 7)

Identity

Alias_nameszinc finger protein 7 (KOX 4, clone HF.16)
Alias_symbol (synonym)KOX4
HF.16
Other aliaszf30
HGNC (Hugo) ZNF7
LocusID (NCBI) 7553
Atlas_Id 76340
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144827518 and ends at 144843222 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPS9 (19q13.42) / ZNF7 (8q24.3)ZNF7 (8q24.3) / HGS (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF7   13139
Cards
Entrez_Gene (NCBI)ZNF7  7553  zinc finger protein 7
AliasesHF.16; KOX4; zf30
GeneCards (Weizmann)ZNF7
Ensembl hg19 (Hinxton)ENSG00000147789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147789 [Gene_View]  ENSG00000147789 [Sequence]  chr8:144827518-144843222 [Contig_View]  ZNF7 [Vega]
ICGC DataPortalENSG00000147789
TCGA cBioPortalZNF7
AceView (NCBI)ZNF7
Genatlas (Paris)ZNF7
WikiGenes7553
SOURCE (Princeton)ZNF7
Genetics Home Reference (NIH)ZNF7
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF7  -     chr8:144827518-144843222 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF7  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblZNF7 - 8q24.3 [CytoView hg19]  ZNF7 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIZNF7 [Mapview hg19]  ZNF7 [Mapview hg38]
OMIM194531   
Gene and transcription
Genbank (Entrez)AB209619 AF027146 AI862153 AK096025 AK300001
RefSeq transcript (Entrez)NM_001282795 NM_001282796 NM_001282797 NM_001330623 NM_001349805 NM_001349806 NM_001349807 NM_001349808 NM_001349809 NM_003416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF7
Cluster EST : UnigeneHs.493218 [ NCBI ]
CGAP (NCI)Hs.493218
Alternative Splicing GalleryENSG00000147789
Gene ExpressionZNF7 [ NCBI-GEO ]   ZNF7 [ EBI - ARRAY_EXPRESS ]   ZNF7 [ SEEK ]   ZNF7 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7553
GTEX Portal (Tissue expression)ZNF7
Human Protein AtlasENSG00000147789-ZNF7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17097   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17097  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17097
Splice isoforms : SwissVarP17097
PhosPhoSitePlusP17097
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF7
DMDM Disease mutations7553
Blocks (Seattle)ZNF7
SuperfamilyP17097
Human Protein Atlas [tissue]ENSG00000147789-ZNF7 [tissue]
Peptide AtlasP17097
HPRD01918
IPIIPI00943261   IPI00985494   IPI00978177   IPI00012527   IPI00978963   IPI00178633   IPI00979034   IPI00979665   IPI00976045   IPI00979737   
Protein Interaction databases
DIP (DOE-UCLA)P17097
IntAct (EBI)P17097
FunCoupENSG00000147789
BioGRIDZNF7
STRING (EMBL)ZNF7
ZODIACZNF7
Ontologies - Pathways
QuickGOP17097
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
NDEx NetworkZNF7
Atlas of Cancer Signalling NetworkZNF7
Wikipedia pathwaysZNF7
Orthology - Evolution
OrthoDB7553
GeneTree (enSembl)ENSG00000147789
Phylogenetic Trees/Animal Genes : TreeFamZNF7
HOVERGENP17097
HOGENOMP17097
Homologs : HomoloGeneZNF7
Homology/Alignments : Family Browser (UCSC)ZNF7
Gene fusions - Rearrangements
Fusion : QuiverZNF7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF7
dbVarZNF7
ClinVarZNF7
1000_GenomesZNF7 
Exome Variant ServerZNF7
ExAC (Exome Aggregation Consortium)ENSG00000147789
GNOMAD BrowserENSG00000147789
Varsome BrowserZNF7
Genetic variants : HAPMAP7553
Genomic Variants (DGV)ZNF7 [DGVbeta]
DECIPHERZNF7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF7 
Mutations
ICGC Data PortalZNF7 
TCGA Data PortalZNF7 
Broad Tumor PortalZNF7
OASIS PortalZNF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF7
DgiDB (Drug Gene Interaction Database)ZNF7
DoCM (Curated mutations)ZNF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF7 (select a term)
intoGenZNF7
Cancer3DZNF7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194531   
Orphanet
DisGeNETZNF7
MedgenZNF7
Genetic Testing Registry ZNF7
NextProtP17097 [Medical]
TSGene7553
GENETestsZNF7
Target ValidationZNF7
Huge Navigator ZNF7 [HugePedia]
snp3D : Map Gene to Disease7553
BioCentury BCIQZNF7
ClinGenZNF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7553
Chemical/Pharm GKB GenePA37713
Clinical trialZNF7
Miscellaneous
canSAR (ICR)ZNF7 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF7
EVEXZNF7
GoPubMedZNF7
iHOPZNF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:40:27 CEST 2018
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