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ZNF709 (zinc finger protein 709)

Identity

Alias_symbol (synonym)FLJ38281
Other alias-
HGNC (Hugo) ZNF709
LocusID (NCBI) 163051
Atlas_Id 76352
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12571998 and ends at 12595632 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF709 (19p13.2) / CD177 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF709   20629
Cards
Entrez_Gene (NCBI)ZNF709  163051  zinc finger protein 709
Aliases
GeneCards (Weizmann)ZNF709
Ensembl hg19 (Hinxton)ENSG00000196826 [Gene_View]  chr19:12571998-12595632 [Contig_View]  ZNF709 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196826 [Gene_View]  chr19:12571998-12595632 [Contig_View]  ZNF709 [Vega]
ICGC DataPortalENSG00000196826
TCGA cBioPortalZNF709
AceView (NCBI)ZNF709
Genatlas (Paris)ZNF709
WikiGenes163051
SOURCE (Princeton)ZNF709
Genetics Home Reference (NIH)ZNF709
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF709  -     chr19:12571998-12595632 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF709  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZNF709 - 19p13.2 [CytoView hg19]  ZNF709 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF709 [Mapview hg19]  ZNF709 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK290911 BC036481 BC038531 BC136746 BC136751
RefSeq transcript (Entrez)NM_001145647 NM_152601
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZNF709
Cluster EST : UnigeneHs.631623 [ NCBI ]
CGAP (NCI)Hs.631623
Alternative Splicing GalleryENSG00000196826
Gene ExpressionZNF709 [ NCBI-GEO ]   ZNF709 [ EBI - ARRAY_EXPRESS ]   ZNF709 [ SEEK ]   ZNF709 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF709 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163051
GTEX Portal (Tissue expression)ZNF709
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N972   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N972  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N972
Splice isoforms : SwissVarQ8N972
PhosPhoSitePlusQ8N972
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF709
DMDM Disease mutations163051
Blocks (Seattle)ZNF709
SuperfamilyQ8N972
Human Protein AtlasENSG00000196826
Peptide AtlasQ8N972
HPRD08236
IPIIPI00640218   IPI00925951   
Protein Interaction databases
DIP (DOE-UCLA)Q8N972
IntAct (EBI)Q8N972
FunCoupENSG00000196826
BioGRIDZNF709
STRING (EMBL)ZNF709
ZODIACZNF709
Ontologies - Pathways
QuickGOQ8N972
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF709
Atlas of Cancer Signalling NetworkZNF709
Wikipedia pathwaysZNF709
Orthology - Evolution
OrthoDB163051
GeneTree (enSembl)ENSG00000196826
Phylogenetic Trees/Animal Genes : TreeFamZNF709
HOVERGENQ8N972
HOGENOMQ8N972
Homologs : HomoloGeneZNF709
Homology/Alignments : Family Browser (UCSC)ZNF709
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF709 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF709
dbVarZNF709
ClinVarZNF709
1000_GenomesZNF709 
Exome Variant ServerZNF709
ExAC (Exome Aggregation Consortium)ZNF709 (select the gene name)
Genetic variants : HAPMAP163051
Genomic Variants (DGV)ZNF709 [DGVbeta]
DECIPHER (Syndromes)19:12571998-12595632  ENSG00000196826
CONAN: Copy Number AnalysisZNF709 
Mutations
ICGC Data PortalZNF709 
TCGA Data PortalZNF709 
Broad Tumor PortalZNF709
OASIS PortalZNF709 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF709  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF709
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF709
DgiDB (Drug Gene Interaction Database)ZNF709
DoCM (Curated mutations)ZNF709 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF709 (select a term)
intoGenZNF709
Cancer3DZNF709(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF709
Genetic Testing Registry ZNF709
NextProtQ8N972 [Medical]
TSGene163051
GENETestsZNF709
Huge Navigator ZNF709 [HugePedia]
snp3D : Map Gene to Disease163051
BioCentury BCIQZNF709
ClinGenZNF709
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163051
Chemical/Pharm GKB GenePA142670469
Clinical trialZNF709
Miscellaneous
canSAR (ICR)ZNF709 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF709
EVEXZNF709
GoPubMedZNF709
iHOPZNF709
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:43 CET 2017

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