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ZNF71 (zinc finger protein 71)

Identity

Alias_nameszinc finger protein 71 (Cos26)
Alias_symbol (synonym)Cos26
EZFIT
Other alias
HGNC (Hugo) ZNF71
LocusID (NCBI) 58491
Atlas_Id 76353
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56595296 and ends at 56624176 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF71   13141
Cards
Entrez_Gene (NCBI)ZNF71  58491  zinc finger protein 71
AliasesEZFIT
GeneCards (Weizmann)ZNF71
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:56595296-56624176 [Contig_View]  ZNF71 [Vega]
TCGA cBioPortalZNF71
AceView (NCBI)ZNF71
Genatlas (Paris)ZNF71
WikiGenes58491
SOURCE (Princeton)ZNF71
Genetics Home Reference (NIH)ZNF71
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF71  -     chr19:56595296-56624176 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF71  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF71 - 19q13.43 [CytoView hg19]  ZNF71 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF71 [Mapview hg19]  ZNF71 [Mapview hg38]
OMIM194545   
Gene and transcription
Genbank (Entrez)AF269249 AK057019 AL137486 BC014280 BP377051
RefSeq transcript (Entrez)NM_021216
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF71
Cluster EST : UnigeneHs.600391 [ NCBI ]
CGAP (NCI)Hs.600391
Gene ExpressionZNF71 [ NCBI-GEO ]   ZNF71 [ EBI - ARRAY_EXPRESS ]   ZNF71 [ SEEK ]   ZNF71 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58491
GTEX Portal (Tissue expression)ZNF71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQZ8
Splice isoforms : SwissVarQ9NQZ8
PhosPhoSitePlusQ9NQZ8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF71
DMDM Disease mutations58491
Blocks (Seattle)ZNF71
SuperfamilyQ9NQZ8
Peptide AtlasQ9NQZ8
HPRD11838
IPIIPI00021547   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQZ8
IntAct (EBI)Q9NQZ8
BioGRIDZNF71
STRING (EMBL)ZNF71
ZODIACZNF71
Ontologies - Pathways
QuickGOQ9NQZ8
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF71
Atlas of Cancer Signalling NetworkZNF71
Wikipedia pathwaysZNF71
Orthology - Evolution
OrthoDB58491
Phylogenetic Trees/Animal Genes : TreeFamZNF71
HOVERGENQ9NQZ8
HOGENOMQ9NQZ8
Homologs : HomoloGeneZNF71
Homology/Alignments : Family Browser (UCSC)ZNF71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF71
dbVarZNF71
ClinVarZNF71
1000_GenomesZNF71 
Exome Variant ServerZNF71
ExAC (Exome Aggregation Consortium)ZNF71 (select the gene name)
Genetic variants : HAPMAP58491
Genomic Variants (DGV)ZNF71 [DGVbeta]
DECIPHERZNF71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF71 
Mutations
ICGC Data PortalZNF71 
TCGA Data PortalZNF71 
Broad Tumor PortalZNF71
OASIS PortalZNF71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF71
DgiDB (Drug Gene Interaction Database)ZNF71
DoCM (Curated mutations)ZNF71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF71 (select a term)
intoGenZNF71
Cancer3DZNF71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194545   
Orphanet
MedgenZNF71
Genetic Testing Registry ZNF71
NextProtQ9NQZ8 [Medical]
TSGene58491
GENETestsZNF71
Target ValidationZNF71
Huge Navigator ZNF71 [HugePedia]
snp3D : Map Gene to Disease58491
BioCentury BCIQZNF71
ClinGenZNF71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58491
Chemical/Pharm GKB GenePA37715
Clinical trialZNF71
Miscellaneous
canSAR (ICR)ZNF71 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF71
EVEXZNF71
GoPubMedZNF71
iHOPZNF71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:08 CEST 2017

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