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ZNF716 (zinc finger protein 716)

Identity

Alias_symbol (synonym)FLJ46189
Other alias-
HGNC (Hugo) ZNF716
LocusID (NCBI) 441234
Atlas_Id 76357
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 57450177 and ends at 57473559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF716 (7p11.2) / C7orf72 (7p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF716   32458
Cards
Entrez_Gene (NCBI)ZNF716  441234  zinc finger protein 716
Aliases
GeneCards (Weizmann)ZNF716
Ensembl hg19 (Hinxton)ENSG00000182111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182111 [Gene_View]  chr7:57450177-57473559 [Contig_View]  ZNF716 [Vega]
ICGC DataPortalENSG00000182111
TCGA cBioPortalZNF716
AceView (NCBI)ZNF716
Genatlas (Paris)ZNF716
WikiGenes441234
SOURCE (Princeton)ZNF716
Genetics Home Reference (NIH)ZNF716
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF716  -     chr7:57450177-57473559 +  7p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF716  -     7p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF716 - 7p11.2 [CytoView hg19]  ZNF716 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF716 [Mapview hg19]  ZNF716 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131575
RefSeq transcript (Entrez)NM_001159279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF716
Cluster EST : UnigeneHs.533121 [ NCBI ]
CGAP (NCI)Hs.533121
Alternative Splicing GalleryENSG00000182111
Gene ExpressionZNF716 [ NCBI-GEO ]   ZNF716 [ EBI - ARRAY_EXPRESS ]   ZNF716 [ SEEK ]   ZNF716 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF716 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441234
GTEX Portal (Tissue expression)ZNF716
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NP11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NP11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NP11
Splice isoforms : SwissVarA6NP11
PhosPhoSitePlusA6NP11
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF716
DMDM Disease mutations441234
Blocks (Seattle)ZNF716
SuperfamilyA6NP11
Human Protein AtlasENSG00000182111
Peptide AtlasA6NP11
IPIIPI01009793   IPI00741415   
Protein Interaction databases
DIP (DOE-UCLA)A6NP11
IntAct (EBI)A6NP11
FunCoupENSG00000182111
BioGRIDZNF716
STRING (EMBL)ZNF716
ZODIACZNF716
Ontologies - Pathways
QuickGOA6NP11
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF716
Atlas of Cancer Signalling NetworkZNF716
Wikipedia pathwaysZNF716
Orthology - Evolution
OrthoDB441234
GeneTree (enSembl)ENSG00000182111
Phylogenetic Trees/Animal Genes : TreeFamZNF716
HOVERGENA6NP11
HOGENOMA6NP11
Homologs : HomoloGeneZNF716
Homology/Alignments : Family Browser (UCSC)ZNF716
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF716 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF716
dbVarZNF716
ClinVarZNF716
1000_GenomesZNF716 
Exome Variant ServerZNF716
ExAC (Exome Aggregation Consortium)ZNF716 (select the gene name)
Genetic variants : HAPMAP441234
Genomic Variants (DGV)ZNF716 [DGVbeta]
DECIPHERZNF716 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF716 
Mutations
ICGC Data PortalZNF716 
TCGA Data PortalZNF716 
Broad Tumor PortalZNF716
OASIS PortalZNF716 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF716  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF716
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF716
DgiDB (Drug Gene Interaction Database)ZNF716
DoCM (Curated mutations)ZNF716 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF716 (select a term)
intoGenZNF716
Cancer3DZNF716(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF716
Genetic Testing Registry ZNF716
NextProtA6NP11 [Medical]
TSGene441234
GENETestsZNF716
Target ValidationZNF716
Huge Navigator ZNF716 [HugePedia]
snp3D : Map Gene to Disease441234
BioCentury BCIQZNF716
ClinGenZNF716
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441234
Chemical/Pharm GKB GenePA143485681
Clinical trialZNF716
Miscellaneous
canSAR (ICR)ZNF716 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF716
EVEXZNF716
GoPubMedZNF716
iHOPZNF716
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:13 CEST 2017

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