Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF717 (zinc finger protein 717)

Identity

Alias_namesZNF838
zinc finger protein 838
Alias_symbol (synonym)X17
HGNC (Hugo) ZNF717
LocusID (NCBI) 100131827
Atlas_Id 76358
Location 3p12.3  [Link to chromosome band 3p12]
Location_base_pair Starts at 75786029 and ends at 75834255 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ITGB1 (10p11.22) / ZNF717 (3p12.3)ZNF717 (3p12.3) / TMEM254 (10q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF717   29448
Cards
Entrez_Gene (NCBI)ZNF717  100131827  zinc finger protein 717
AliasesX17; ZNF838
GeneCards (Weizmann)ZNF717
Ensembl hg19 (Hinxton)ENSG00000227124 [Gene_View]  chr3:75786029-75834255 [Contig_View]  ZNF717 [Vega]
Ensembl hg38 (Hinxton)ENSG00000227124 [Gene_View]  chr3:75786029-75834255 [Contig_View]  ZNF717 [Vega]
ICGC DataPortalENSG00000227124
TCGA cBioPortalZNF717
AceView (NCBI)ZNF717
Genatlas (Paris)ZNF717
WikiGenes100131827
SOURCE (Princeton)ZNF717
Genetics Home Reference (NIH)ZNF717
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF717  -     chr3:75786029-75834255 -  3p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF717  -     3p12.3   [Description]    (hg38-Dec_2013)
EnsemblZNF717 - 3p12.3 [CytoView hg19]  ZNF717 - 3p12.3 [CytoView hg38]
Mapping of homologs : NCBIZNF717 [Mapview hg19]  ZNF717 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF226994 AK123776 BQ189284 BQ928230 BX091527
RefSeq transcript (Entrez)NM_001128223 NM_001290208 NM_001290209 NM_001290210
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929310
Consensus coding sequences : CCDS (NCBI)ZNF717
Cluster EST : UnigeneHs.556877 [ NCBI ]
CGAP (NCI)Hs.556877
Alternative Splicing GalleryENSG00000227124
Gene ExpressionZNF717 [ NCBI-GEO ]   ZNF717 [ EBI - ARRAY_EXPRESS ]   ZNF717 [ SEEK ]   ZNF717 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF717 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131827
GTEX Portal (Tissue expression)ZNF717
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY31
Splice isoforms : SwissVarQ9BY31
PhosPhoSitePlusQ9BY31
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF717
DMDM Disease mutations100131827
Blocks (Seattle)ZNF717
SuperfamilyQ9BY31
Human Protein AtlasENSG00000227124
Peptide AtlasQ9BY31
IPIIPI00937863   IPI00737799   IPI00973186   IPI00938266   IPI00945640   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY31
IntAct (EBI)Q9BY31
FunCoupENSG00000227124
BioGRIDZNF717
STRING (EMBL)ZNF717
ZODIACZNF717
Ontologies - Pathways
QuickGOQ9BY31
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF717
Atlas of Cancer Signalling NetworkZNF717
Wikipedia pathwaysZNF717
Orthology - Evolution
OrthoDB100131827
GeneTree (enSembl)ENSG00000227124
Phylogenetic Trees/Animal Genes : TreeFamZNF717
HOVERGENQ9BY31
HOGENOMQ9BY31
Homologs : HomoloGeneZNF717
Homology/Alignments : Family Browser (UCSC)ZNF717
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF717 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF717
dbVarZNF717
ClinVarZNF717
1000_GenomesZNF717 
Exome Variant ServerZNF717
ExAC (Exome Aggregation Consortium)ZNF717 (select the gene name)
Genetic variants : HAPMAP100131827
Genomic Variants (DGV)ZNF717 [DGVbeta]
DECIPHER (Syndromes)3:75786029-75834255  ENSG00000227124
CONAN: Copy Number AnalysisZNF717 
Mutations
ICGC Data PortalZNF717 
TCGA Data PortalZNF717 
Broad Tumor PortalZNF717
OASIS PortalZNF717 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF717  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF717
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF717
DgiDB (Drug Gene Interaction Database)ZNF717
DoCM (Curated mutations)ZNF717 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF717 (select a term)
intoGenZNF717
Cancer3DZNF717(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF717
Genetic Testing Registry ZNF717
NextProtQ9BY31 [Medical]
TSGene100131827
GENETestsZNF717
Huge Navigator ZNF717 [HugePedia]
snp3D : Map Gene to Disease100131827
BioCentury BCIQZNF717
ClinGenZNF717
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131827
Chemical/Pharm GKB GenePA142670471
Clinical trialZNF717
Miscellaneous
canSAR (ICR)ZNF717 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF717
EVEXZNF717
GoPubMedZNF717
iHOPZNF717
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Dec 29 13:56:19 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.