Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF721 (zinc finger protein 721)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNF721
HGNC Alias symbKIAA1982
LocusID (NCBI) 170960
Atlas_Id 78418
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 439984 and ends at 499171 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TFDP2 (3q23) / ZNF721 (4p16.3)ZNF721 (4p16.3) / RFPL3S (22q12.3)ZNF721 (4p16.3) / RPS9 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(4;22)(p16;q12) ZNF721/RFPL3S

External links

Nomenclature
HGNC (Hugo)ZNF721   29425
Cards
Entrez_Gene (NCBI)ZNF721    zinc finger protein 721
Aliases
GeneCards (Weizmann)ZNF721
Ensembl hg19 (Hinxton)ENSG00000182903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182903 [Gene_View]  ENSG00000182903 [Sequence]  chr4:439984-499171 [Contig_View]  ZNF721 [Vega]
ICGC DataPortalENSG00000182903
TCGA cBioPortalZNF721
AceView (NCBI)ZNF721
Genatlas (Paris)ZNF721
SOURCE (Princeton)ZNF721
Genetics Home Reference (NIH)ZNF721
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF721  -     chr4:439984-499171 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF721  -     4p16.3   [Description]    (hg19-Feb_2009)
GoldenPathZNF721 - 4p16.3 [CytoView hg19]  ZNF721 - 4p16.3 [CytoView hg38]
ImmunoBaseENSG00000182903
genome Data Viewer NCBIZNF721 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB075862 AI223001 AK021514 AK092362 AK095558
RefSeq transcript (Entrez)NM_133474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF721
Alternative Splicing GalleryENSG00000182903
Gene ExpressionZNF721 [ NCBI-GEO ]   ZNF721 [ EBI - ARRAY_EXPRESS ]   ZNF721 [ SEEK ]   ZNF721 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF721 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF721 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170960
GTEX Portal (Tissue expression)ZNF721
Human Protein AtlasENSG00000182903-ZNF721 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF20
Splice isoforms : SwissVarQ8TF20
PhosPhoSitePlusQ8TF20
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf-C2H2_11    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_11 (PF16622)   
Domain families : Pfam (NCBI)pfam00096    pfam16622   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF721
Blocks (Seattle)ZNF721
SuperfamilyQ8TF20
Human Protein Atlas [tissue]ENSG00000182903-ZNF721 [tissue]
Peptide AtlasQ8TF20
HPRD13910
IPIIPI00966894   IPI00556434   IPI00967878   IPI00908487   IPI00973847   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF20
IntAct (EBI)Q8TF20
BioGRIDZNF721
STRING (EMBL)ZNF721
ZODIACZNF721
Ontologies - Pathways
QuickGOQ8TF20
Ontology : AmiGODNA binding  nucleus  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  metal ion binding  
NDEx NetworkZNF721
Atlas of Cancer Signalling NetworkZNF721
Wikipedia pathwaysZNF721
Orthology - Evolution
OrthoDB170960
GeneTree (enSembl)ENSG00000182903
Phylogenetic Trees/Animal Genes : TreeFamZNF721
HOGENOMQ8TF20
Homologs : HomoloGeneZNF721
Homology/Alignments : Family Browser (UCSC)ZNF721
Gene fusions - Rearrangements
Fusion : QuiverZNF721
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF721 [hg38]
dbVarZNF721
ClinVarZNF721
MonarchZNF721
1000_GenomesZNF721 
Exome Variant ServerZNF721
GNOMAD BrowserENSG00000182903
Varsome BrowserZNF721
Genomic Variants (DGV)ZNF721 [DGVbeta]
DECIPHERZNF721 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF721 
Mutations
ICGC Data PortalZNF721 
TCGA Data PortalZNF721 
Broad Tumor PortalZNF721
OASIS PortalZNF721 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF721  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF721
Mutations and Diseases : HGMDZNF721
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF721
DgiDB (Drug Gene Interaction Database)ZNF721
DoCM (Curated mutations)ZNF721 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF721 (select a term)
intoGenZNF721
Cancer3DZNF721(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF721
MedgenZNF721
Genetic Testing Registry ZNF721
NextProtQ8TF20 [Medical]
GENETestsZNF721
Target ValidationZNF721
Huge Navigator ZNF721 [HugePedia]
ClinGenZNF721
Clinical trials, drugs, therapy
MyCancerGenomeZNF721
Protein Interactions : CTD
Pharm GKB GenePA143485684
Clinical trialZNF721
Miscellaneous
canSAR (ICR)ZNF721 (select the gene name)
HarmonizomeZNF721
DataMed IndexZNF721
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF721
EVEXZNF721
GoPubMedZNF721
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:36:45 CET 2020
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