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ZNF727 (zinc finger protein 727)

Identity

Alias_namesZNF727P
zinc finger protein 727, pseudogene
Other alias
HGNC (Hugo) ZNF727
LocusID (NCBI) 442319
Atlas_Id 76364
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 63505821 and ends at 63538927 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF727   22785
Cards
Entrez_Gene (NCBI)ZNF727  442319  zinc finger protein 727
AliasesZNF727P
GeneCards (Weizmann)ZNF727
Ensembl hg19 (Hinxton)ENSG00000214652 [Gene_View]  chr7:63505821-63538927 [Contig_View]  ZNF727 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214652 [Gene_View]  chr7:63505821-63538927 [Contig_View]  ZNF727 [Vega]
ICGC DataPortalENSG00000214652
TCGA cBioPortalZNF727
AceView (NCBI)ZNF727
Genatlas (Paris)ZNF727
WikiGenes442319
SOURCE (Princeton)ZNF727
Genetics Home Reference (NIH)ZNF727
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF727  -     chr7:63505821-63538927 +  7q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF727  -     7q11.21   [Description]    (hg38-Dec_2013)
EnsemblZNF727 - 7q11.21 [CytoView hg19]  ZNF727 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF727 [Mapview hg19]  ZNF727 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA235663
RefSeq transcript (Entrez)NM_001159522
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_011772 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ZNF727
Cluster EST : UnigeneHs.640774 [ NCBI ]
CGAP (NCI)Hs.640774
Alternative Splicing GalleryENSG00000214652
Gene ExpressionZNF727 [ NCBI-GEO ]   ZNF727 [ EBI - ARRAY_EXPRESS ]   ZNF727 [ SEEK ]   ZNF727 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF727 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442319
GTEX Portal (Tissue expression)ZNF727
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUV8
Splice isoforms : SwissVarA8MUV8
PhosPhoSitePlusA8MUV8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF727
DMDM Disease mutations442319
Blocks (Seattle)ZNF727
SuperfamilyA8MUV8
Human Protein AtlasENSG00000214652
Peptide AtlasA8MUV8
IPIIPI00786956   
Protein Interaction databases
DIP (DOE-UCLA)A8MUV8
IntAct (EBI)A8MUV8
FunCoupENSG00000214652
BioGRIDZNF727
STRING (EMBL)ZNF727
ZODIACZNF727
Ontologies - Pathways
QuickGOA8MUV8
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF727
Atlas of Cancer Signalling NetworkZNF727
Wikipedia pathwaysZNF727
Orthology - Evolution
OrthoDB442319
GeneTree (enSembl)ENSG00000214652
Phylogenetic Trees/Animal Genes : TreeFamZNF727
HOVERGENA8MUV8
HOGENOMA8MUV8
Homologs : HomoloGeneZNF727
Homology/Alignments : Family Browser (UCSC)ZNF727
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF727 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF727
dbVarZNF727
ClinVarZNF727
1000_GenomesZNF727 
Exome Variant ServerZNF727
ExAC (Exome Aggregation Consortium)ZNF727 (select the gene name)
Genetic variants : HAPMAP442319
Genomic Variants (DGV)ZNF727 [DGVbeta]
DECIPHER (Syndromes)7:63505821-63538927  ENSG00000214652
CONAN: Copy Number AnalysisZNF727 
Mutations
ICGC Data PortalZNF727 
TCGA Data PortalZNF727 
Broad Tumor PortalZNF727
OASIS PortalZNF727 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF727  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF727
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF727
DgiDB (Drug Gene Interaction Database)ZNF727
DoCM (Curated mutations)ZNF727 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF727 (select a term)
intoGenZNF727
Cancer3DZNF727(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF727
Genetic Testing Registry ZNF727
NextProtA8MUV8 [Medical]
TSGene442319
GENETestsZNF727
Huge Navigator ZNF727 [HugePedia]
snp3D : Map Gene to Disease442319
BioCentury BCIQZNF727
ClinGenZNF727
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442319
Chemical/Pharm GKB GenePA162410231
Clinical trialZNF727
Miscellaneous
canSAR (ICR)ZNF727 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF727
EVEXZNF727
GoPubMedZNF727
iHOPZNF727
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:46 CET 2017

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