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ZNF729 (zinc finger protein 729)

Identity

Other alias-
HGNC (Hugo) ZNF729
LocusID (NCBI) 100287226
Atlas_Id 76366
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22286450 and ends at 22317176 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF729   32464
Cards
Entrez_Gene (NCBI)ZNF729  100287226  zinc finger protein 729
Aliases
GeneCards (Weizmann)ZNF729
Ensembl hg19 (Hinxton)ENSG00000196350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196350 [Gene_View]  chr19:22286450-22317176 [Contig_View]  ZNF729 [Vega]
ICGC DataPortalENSG00000196350
TCGA cBioPortalZNF729
AceView (NCBI)ZNF729
Genatlas (Paris)ZNF729
WikiGenes100287226
SOURCE (Princeton)ZNF729
Genetics Home Reference (NIH)ZNF729
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF729  -     chr19:22286450-22317176 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF729  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF729 - 19p12 [CytoView hg19]  ZNF729 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF729 [Mapview hg19]  ZNF729 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX956721
RefSeq transcript (Entrez)NM_001242680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF729
Cluster EST : UnigeneHs.531629 [ NCBI ]
CGAP (NCI)Hs.531629
Alternative Splicing GalleryENSG00000196350
Gene ExpressionZNF729 [ NCBI-GEO ]   ZNF729 [ EBI - ARRAY_EXPRESS ]   ZNF729 [ SEEK ]   ZNF729 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF729 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287226
GTEX Portal (Tissue expression)ZNF729
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NN14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NN14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NN14
Splice isoforms : SwissVarA6NN14
PhosPhoSitePlusA6NN14
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF729
DMDM Disease mutations100287226
Blocks (Seattle)ZNF729
SuperfamilyA6NN14
Human Protein AtlasENSG00000196350
Peptide AtlasA6NN14
IPIIPI00645478   
Protein Interaction databases
DIP (DOE-UCLA)A6NN14
IntAct (EBI)A6NN14
FunCoupENSG00000196350
BioGRIDZNF729
STRING (EMBL)ZNF729
ZODIACZNF729
Ontologies - Pathways
QuickGOA6NN14
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF729
Atlas of Cancer Signalling NetworkZNF729
Wikipedia pathwaysZNF729
Orthology - Evolution
OrthoDB100287226
GeneTree (enSembl)ENSG00000196350
Phylogenetic Trees/Animal Genes : TreeFamZNF729
HOVERGENA6NN14
HOGENOMA6NN14
Homologs : HomoloGeneZNF729
Homology/Alignments : Family Browser (UCSC)ZNF729
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF729 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF729
dbVarZNF729
ClinVarZNF729
1000_GenomesZNF729 
Exome Variant ServerZNF729
ExAC (Exome Aggregation Consortium)ZNF729 (select the gene name)
Genetic variants : HAPMAP100287226
Genomic Variants (DGV)ZNF729 [DGVbeta]
DECIPHERZNF729 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF729 
Mutations
ICGC Data PortalZNF729 
TCGA Data PortalZNF729 
Broad Tumor PortalZNF729
OASIS PortalZNF729 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF729  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF729
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF729
DgiDB (Drug Gene Interaction Database)ZNF729
DoCM (Curated mutations)ZNF729 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF729 (select a term)
intoGenZNF729
Cancer3DZNF729(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF729
Genetic Testing Registry ZNF729
NextProtA6NN14 [Medical]
TSGene100287226
GENETestsZNF729
Huge Navigator ZNF729 [HugePedia]
snp3D : Map Gene to Disease100287226
BioCentury BCIQZNF729
ClinGenZNF729
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287226
Chemical/Pharm GKB GenePA145149938
Clinical trialZNF729
Miscellaneous
canSAR (ICR)ZNF729 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF729
EVEXZNF729
GoPubMedZNF729
iHOPZNF729
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:03:44 CEST 2017

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