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ZNF740 (zinc finger protein 740)

Identity

Alias_symbol (synonym)Zfp740
Other alias
HGNC (Hugo) ZNF740
LocusID (NCBI) 283337
Atlas_Id 76374
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53180751 and ends at 53190870 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF740 (12q13.13) / AGAP2 (12q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF740   27465
Cards
Entrez_Gene (NCBI)ZNF740  283337  zinc finger protein 740
AliasesZfp740
GeneCards (Weizmann)ZNF740
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:53180751-53190870 [Contig_View]  ZNF740 [Vega]
TCGA cBioPortalZNF740
AceView (NCBI)ZNF740
Genatlas (Paris)ZNF740
WikiGenes283337
SOURCE (Princeton)ZNF740
Genetics Home Reference (NIH)ZNF740
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF740  -     chr12:53180751-53190870 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF740  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblZNF740 - 12q13.13 [CytoView hg19]  ZNF740 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIZNF740 [Mapview hg19]  ZNF740 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086252 AK091946 AK292744 BC053557
RefSeq transcript (Entrez)NM_001004304
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF740
Cluster EST : UnigeneHs.524458 [ NCBI ]
CGAP (NCI)Hs.524458
Gene ExpressionZNF740 [ NCBI-GEO ]   ZNF740 [ EBI - ARRAY_EXPRESS ]   ZNF740 [ SEEK ]   ZNF740 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF740 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283337
GTEX Portal (Tissue expression)ZNF740
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDX6
Splice isoforms : SwissVarQ8NDX6
PhosPhoSitePlusQ8NDX6
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF740
DMDM Disease mutations283337
Blocks (Seattle)ZNF740
SuperfamilyQ8NDX6
Peptide AtlasQ8NDX6
HPRD17329
IPIIPI00401002   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDX6
IntAct (EBI)Q8NDX6
BioGRIDZNF740
STRING (EMBL)ZNF740
ZODIACZNF740
Ontologies - Pathways
QuickGOQ8NDX6
Ontology : AmiGOnucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF740
Atlas of Cancer Signalling NetworkZNF740
Wikipedia pathwaysZNF740
Orthology - Evolution
OrthoDB283337
Phylogenetic Trees/Animal Genes : TreeFamZNF740
HOVERGENQ8NDX6
HOGENOMQ8NDX6
Homologs : HomoloGeneZNF740
Homology/Alignments : Family Browser (UCSC)ZNF740
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF740 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF740
dbVarZNF740
ClinVarZNF740
1000_GenomesZNF740 
Exome Variant ServerZNF740
ExAC (Exome Aggregation Consortium)ZNF740 (select the gene name)
Genetic variants : HAPMAP283337
Genomic Variants (DGV)ZNF740 [DGVbeta]
DECIPHERZNF740 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF740 
Mutations
ICGC Data PortalZNF740 
TCGA Data PortalZNF740 
Broad Tumor PortalZNF740
OASIS PortalZNF740 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF740  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF740
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF740
DgiDB (Drug Gene Interaction Database)ZNF740
DoCM (Curated mutations)ZNF740 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF740 (select a term)
intoGenZNF740
Cancer3DZNF740(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF740
Genetic Testing Registry ZNF740
NextProtQ8NDX6 [Medical]
TSGene283337
GENETestsZNF740
Target ValidationZNF740
Huge Navigator ZNF740 [HugePedia]
snp3D : Map Gene to Disease283337
BioCentury BCIQZNF740
ClinGenZNF740
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283337
Chemical/Pharm GKB GenePA143485686
Clinical trialZNF740
Miscellaneous
canSAR (ICR)ZNF740 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF740
EVEXZNF740
GoPubMedZNF740
iHOPZNF740
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:16 CEST 2017

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