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ZNF749 (zinc finger protein 749)

Identity

Alias_symbol (synonym)FLJ16360
Other alias-
HGNC (Hugo) ZNF749
LocusID (NCBI) 388567
Atlas_Id 76376
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57435325 and ends at 57447097 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF749   32783
Cards
Entrez_Gene (NCBI)ZNF749  388567  zinc finger protein 749
Aliases
GeneCards (Weizmann)ZNF749
Ensembl hg19 (Hinxton)ENSG00000186230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186230 [Gene_View]  chr19:57435325-57447097 [Contig_View]  ZNF749 [Vega]
ICGC DataPortalENSG00000186230
TCGA cBioPortalZNF749
AceView (NCBI)ZNF749
Genatlas (Paris)ZNF749
WikiGenes388567
SOURCE (Princeton)ZNF749
Genetics Home Reference (NIH)ZNF749
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF749  -     chr19:57435325-57447097 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF749  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF749 - 19q13.43 [CytoView hg19]  ZNF749 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF749 [Mapview hg19]  ZNF749 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122740 AK122794 BP872084 DB099619
RefSeq transcript (Entrez)NM_001023561 NM_001321952 NM_001321953 NM_001321954
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF749
Cluster EST : UnigeneHs.467358 [ NCBI ]
CGAP (NCI)Hs.467358
Alternative Splicing GalleryENSG00000186230
Gene ExpressionZNF749 [ NCBI-GEO ]   ZNF749 [ EBI - ARRAY_EXPRESS ]   ZNF749 [ SEEK ]   ZNF749 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF749 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388567
GTEX Portal (Tissue expression)ZNF749
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43361   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43361  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43361
Splice isoforms : SwissVarO43361
PhosPhoSitePlusO43361
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF749
DMDM Disease mutations388567
Blocks (Seattle)ZNF749
SuperfamilyO43361
Human Protein AtlasENSG00000186230
Peptide AtlasO43361
HPRD18610
IPIIPI00878183   IPI00973167   
Protein Interaction databases
DIP (DOE-UCLA)O43361
IntAct (EBI)O43361
FunCoupENSG00000186230
BioGRIDZNF749
STRING (EMBL)ZNF749
ZODIACZNF749
Ontologies - Pathways
QuickGOO43361
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF749
Atlas of Cancer Signalling NetworkZNF749
Wikipedia pathwaysZNF749
Orthology - Evolution
OrthoDB388567
GeneTree (enSembl)ENSG00000186230
Phylogenetic Trees/Animal Genes : TreeFamZNF749
HOVERGENO43361
HOGENOMO43361
Homologs : HomoloGeneZNF749
Homology/Alignments : Family Browser (UCSC)ZNF749
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF749 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF749
dbVarZNF749
ClinVarZNF749
1000_GenomesZNF749 
Exome Variant ServerZNF749
ExAC (Exome Aggregation Consortium)ZNF749 (select the gene name)
Genetic variants : HAPMAP388567
Genomic Variants (DGV)ZNF749 [DGVbeta]
DECIPHERZNF749 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF749 
Mutations
ICGC Data PortalZNF749 
TCGA Data PortalZNF749 
Broad Tumor PortalZNF749
OASIS PortalZNF749 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF749  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF749
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF749
DgiDB (Drug Gene Interaction Database)ZNF749
DoCM (Curated mutations)ZNF749 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF749 (select a term)
intoGenZNF749
Cancer3DZNF749(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF749
Genetic Testing Registry ZNF749
NextProtO43361 [Medical]
TSGene388567
GENETestsZNF749
Target ValidationZNF749
Huge Navigator ZNF749 [HugePedia]
snp3D : Map Gene to Disease388567
BioCentury BCIQZNF749
ClinGenZNF749
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388567
Chemical/Pharm GKB GenePA145007248
Clinical trialZNF749
Miscellaneous
canSAR (ICR)ZNF749 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF749
EVEXZNF749
GoPubMedZNF749
iHOPZNF749
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:16 CEST 2017

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