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ZNF75A (zinc finger protein 75a)

Identity

Alias_symbol (synonym)FLJ31529
Other alias-
HGNC (Hugo) ZNF75A
LocusID (NCBI) 7627
Atlas_Id 76377
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3305406 and ends at 3318576 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF75A   13146
Cards
Entrez_Gene (NCBI)ZNF75A  7627  zinc finger protein 75a
Aliases
GeneCards (Weizmann)ZNF75A
Ensembl hg19 (Hinxton)ENSG00000162086 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162086 [Gene_View]  chr16:3305406-3318576 [Contig_View]  ZNF75A [Vega]
ICGC DataPortalENSG00000162086
TCGA cBioPortalZNF75A
AceView (NCBI)ZNF75A
Genatlas (Paris)ZNF75A
WikiGenes7627
SOURCE (Princeton)ZNF75A
Genetics Home Reference (NIH)ZNF75A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF75A  -     chr16:3305406-3318576 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF75A  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF75A - 16p13.3 [CytoView hg19]  ZNF75A - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF75A [Mapview hg19]  ZNF75A [Mapview hg38]
OMIM601473   
Gene and transcription
Genbank (Entrez)AK056091 AK093979 BC039601 BC051366 BC119652
RefSeq transcript (Entrez)NM_001302109 NM_001324041 NM_001324085 NM_153028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF75A
Cluster EST : UnigeneHs.513292 [ NCBI ]
CGAP (NCI)Hs.513292
Alternative Splicing GalleryENSG00000162086
Gene ExpressionZNF75A [ NCBI-GEO ]   ZNF75A [ EBI - ARRAY_EXPRESS ]   ZNF75A [ SEEK ]   ZNF75A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF75A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7627
GTEX Portal (Tissue expression)ZNF75A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N20
Splice isoforms : SwissVarQ96N20
PhosPhoSitePlusQ96N20
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF75A
DMDM Disease mutations7627
Blocks (Seattle)ZNF75A
SuperfamilyQ96N20
Human Protein AtlasENSG00000162086
Peptide AtlasQ96N20
HPRD03278
IPIIPI00075320   IPI00470828   IPI00384278   
Protein Interaction databases
DIP (DOE-UCLA)Q96N20
IntAct (EBI)Q96N20
FunCoupENSG00000162086
BioGRIDZNF75A
STRING (EMBL)ZNF75A
ZODIACZNF75A
Ontologies - Pathways
QuickGOQ96N20
Ontology : AmiGOmolecular_function  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF75A
Atlas of Cancer Signalling NetworkZNF75A
Wikipedia pathwaysZNF75A
Orthology - Evolution
OrthoDB7627
GeneTree (enSembl)ENSG00000162086
Phylogenetic Trees/Animal Genes : TreeFamZNF75A
HOVERGENQ96N20
HOGENOMQ96N20
Homologs : HomoloGeneZNF75A
Homology/Alignments : Family Browser (UCSC)ZNF75A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF75A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF75A
dbVarZNF75A
ClinVarZNF75A
1000_GenomesZNF75A 
Exome Variant ServerZNF75A
ExAC (Exome Aggregation Consortium)ZNF75A (select the gene name)
Genetic variants : HAPMAP7627
Genomic Variants (DGV)ZNF75A [DGVbeta]
DECIPHERZNF75A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF75A 
Mutations
ICGC Data PortalZNF75A 
TCGA Data PortalZNF75A 
Broad Tumor PortalZNF75A
OASIS PortalZNF75A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF75A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF75A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF75A
DgiDB (Drug Gene Interaction Database)ZNF75A
DoCM (Curated mutations)ZNF75A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF75A (select a term)
intoGenZNF75A
Cancer3DZNF75A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601473   
Orphanet
MedgenZNF75A
Genetic Testing Registry ZNF75A
NextProtQ96N20 [Medical]
TSGene7627
GENETestsZNF75A
Huge Navigator ZNF75A [HugePedia]
snp3D : Map Gene to Disease7627
BioCentury BCIQZNF75A
ClinGenZNF75A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7627
Chemical/Pharm GKB GenePA37720
Clinical trialZNF75A
Miscellaneous
canSAR (ICR)ZNF75A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF75A
EVEXZNF75A
GoPubMedZNF75A
iHOPZNF75A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:03:46 CEST 2017

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