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ZNF77 (zinc finger protein 77)

Identity

Alias_nameszinc finger protein 77 (pT1)
Alias_symbol (synonym)pT1
Other alias
HGNC (Hugo) ZNF77
LocusID (NCBI) 58492
Atlas_Id 76387
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2933216 and ends at 2944969 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF77 (19p13.3) / LPCAT2 (16q12.2)ZNF77 (19p13.3) / NUP85 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF77   13150
Cards
Entrez_Gene (NCBI)ZNF77  58492  zinc finger protein 77
AliasespT1
GeneCards (Weizmann)ZNF77
Ensembl hg19 (Hinxton)ENSG00000175691 [Gene_View]  chr19:2933216-2944969 [Contig_View]  ZNF77 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175691 [Gene_View]  chr19:2933216-2944969 [Contig_View]  ZNF77 [Vega]
ICGC DataPortalENSG00000175691
TCGA cBioPortalZNF77
AceView (NCBI)ZNF77
Genatlas (Paris)ZNF77
WikiGenes58492
SOURCE (Princeton)ZNF77
Genetics Home Reference (NIH)ZNF77
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF77  -     chr19:2933216-2944969 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF77  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblZNF77 - 19p13.3 [CytoView hg19]  ZNF77 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF77 [Mapview hg19]  ZNF77 [Mapview hg38]
OMIM194551   
Gene and transcription
Genbank (Entrez)AK290979 AL365370 AW450750 BC043354 BC062561
RefSeq transcript (Entrez)NM_021217
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)ZNF77
Cluster EST : UnigeneHs.38004 [ NCBI ]
CGAP (NCI)Hs.38004
Alternative Splicing GalleryENSG00000175691
Gene ExpressionZNF77 [ NCBI-GEO ]   ZNF77 [ EBI - ARRAY_EXPRESS ]   ZNF77 [ SEEK ]   ZNF77 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF77 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58492
GTEX Portal (Tissue expression)ZNF77
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15935   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15935  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15935
Splice isoforms : SwissVarQ15935
PhosPhoSitePlusQ15935
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF77
DMDM Disease mutations58492
Blocks (Seattle)ZNF77
SuperfamilyQ15935
Human Protein AtlasENSG00000175691
Peptide AtlasQ15935
HPRD08936
IPIIPI00329233   IPI00939680   
Protein Interaction databases
DIP (DOE-UCLA)Q15935
IntAct (EBI)Q15935
FunCoupENSG00000175691
BioGRIDZNF77
STRING (EMBL)ZNF77
ZODIACZNF77
Ontologies - Pathways
QuickGOQ15935
Ontology : AmiGOmolecular_function  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF77
Atlas of Cancer Signalling NetworkZNF77
Wikipedia pathwaysZNF77
Orthology - Evolution
OrthoDB58492
GeneTree (enSembl)ENSG00000175691
Phylogenetic Trees/Animal Genes : TreeFamZNF77
HOVERGENQ15935
HOGENOMQ15935
Homologs : HomoloGeneZNF77
Homology/Alignments : Family Browser (UCSC)ZNF77
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF77 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF77
dbVarZNF77
ClinVarZNF77
1000_GenomesZNF77 
Exome Variant ServerZNF77
ExAC (Exome Aggregation Consortium)ZNF77 (select the gene name)
Genetic variants : HAPMAP58492
Genomic Variants (DGV)ZNF77 [DGVbeta]
DECIPHER (Syndromes)19:2933216-2944969  ENSG00000175691
CONAN: Copy Number AnalysisZNF77 
Mutations
ICGC Data PortalZNF77 
TCGA Data PortalZNF77 
Broad Tumor PortalZNF77
OASIS PortalZNF77 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF77  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF77
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF77
DgiDB (Drug Gene Interaction Database)ZNF77
DoCM (Curated mutations)ZNF77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF77 (select a term)
intoGenZNF77
Cancer3DZNF77(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194551   
Orphanet
MedgenZNF77
Genetic Testing Registry ZNF77
NextProtQ15935 [Medical]
TSGene58492
GENETestsZNF77
Huge Navigator ZNF77 [HugePedia]
snp3D : Map Gene to Disease58492
BioCentury BCIQZNF77
ClinGenZNF77
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58492
Chemical/Pharm GKB GenePA37724
Clinical trialZNF77
Miscellaneous
canSAR (ICR)ZNF77 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF77
EVEXZNF77
GoPubMedZNF77
iHOPZNF77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:50 CET 2017

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