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ZNF770 (zinc finger protein 770)

Identity

Alias_symbol (synonym)FLJ20582
PRO1914
Other alias
HGNC (Hugo) ZNF770
LocusID (NCBI) 54989
Atlas_Id 76388
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34978341 and ends at 34988296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAM10 (15q21.3) / ZNF770 (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF770   26061
Cards
Entrez_Gene (NCBI)ZNF770  54989  zinc finger protein 770
AliasesPRO1914
GeneCards (Weizmann)ZNF770
Ensembl hg19 (Hinxton)ENSG00000198146 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198146 [Gene_View]  chr15:34978341-34988296 [Contig_View]  ZNF770 [Vega]
ICGC DataPortalENSG00000198146
TCGA cBioPortalZNF770
AceView (NCBI)ZNF770
Genatlas (Paris)ZNF770
WikiGenes54989
SOURCE (Princeton)ZNF770
Genetics Home Reference (NIH)ZNF770
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF770  -     chr15:34978341-34988296 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF770  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblZNF770 - 15q14 [CytoView hg19]  ZNF770 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIZNF770 [Mapview hg19]  ZNF770 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI031776 AI421027 AI890305 AK000589 AK127201
RefSeq transcript (Entrez)NM_014106
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF770
Cluster EST : UnigeneHs.744990 [ NCBI ]
CGAP (NCI)Hs.744990
Alternative Splicing GalleryENSG00000198146
Gene ExpressionZNF770 [ NCBI-GEO ]   ZNF770 [ EBI - ARRAY_EXPRESS ]   ZNF770 [ SEEK ]   ZNF770 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF770 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54989
GTEX Portal (Tissue expression)ZNF770
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IQ21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IQ21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IQ21
Splice isoforms : SwissVarQ6IQ21
PhosPhoSitePlusQ6IQ21
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF770
DMDM Disease mutations54989
Blocks (Seattle)ZNF770
SuperfamilyQ6IQ21
Human Protein AtlasENSG00000198146
Peptide AtlasQ6IQ21
HPRD16918
IPIIPI00093195   IPI00022938   
Protein Interaction databases
DIP (DOE-UCLA)Q6IQ21
IntAct (EBI)Q6IQ21
FunCoupENSG00000198146
BioGRIDZNF770
STRING (EMBL)ZNF770
ZODIACZNF770
Ontologies - Pathways
QuickGOQ6IQ21
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF770
Atlas of Cancer Signalling NetworkZNF770
Wikipedia pathwaysZNF770
Orthology - Evolution
OrthoDB54989
GeneTree (enSembl)ENSG00000198146
Phylogenetic Trees/Animal Genes : TreeFamZNF770
HOVERGENQ6IQ21
HOGENOMQ6IQ21
Homologs : HomoloGeneZNF770
Homology/Alignments : Family Browser (UCSC)ZNF770
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF770 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF770
dbVarZNF770
ClinVarZNF770
1000_GenomesZNF770 
Exome Variant ServerZNF770
ExAC (Exome Aggregation Consortium)ZNF770 (select the gene name)
Genetic variants : HAPMAP54989
Genomic Variants (DGV)ZNF770 [DGVbeta]
DECIPHERZNF770 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF770 
Mutations
ICGC Data PortalZNF770 
TCGA Data PortalZNF770 
Broad Tumor PortalZNF770
OASIS PortalZNF770 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF770  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF770
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF770
DgiDB (Drug Gene Interaction Database)ZNF770
DoCM (Curated mutations)ZNF770 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF770 (select a term)
intoGenZNF770
Cancer3DZNF770(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF770
Genetic Testing Registry ZNF770
NextProtQ6IQ21 [Medical]
TSGene54989
GENETestsZNF770
Target ValidationZNF770
Huge Navigator ZNF770 [HugePedia]
snp3D : Map Gene to Disease54989
BioCentury BCIQZNF770
ClinGenZNF770
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54989
Chemical/Pharm GKB GenePA162410336
Clinical trialZNF770
Miscellaneous
canSAR (ICR)ZNF770 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF770
EVEXZNF770
GoPubMedZNF770
iHOPZNF770
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:16 CEST 2017

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