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ZNF771 (zinc finger protein 771)

Identity

Alias_symbol (synonym)DSC43
Other alias
HGNC (Hugo) ZNF771
LocusID (NCBI) 51333
Atlas_Id 76389
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30407414 and ends at 30418595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PARVA (11p15.3) / ZNF771 (16p11.2)ZNF771 (16p11.2) / LIMD2 (17q23.3)ZNF771 (16p11.2) / PARVA (11p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF771   29653
Cards
Entrez_Gene (NCBI)ZNF771  51333  zinc finger protein 771
AliasesDSC43
GeneCards (Weizmann)ZNF771
Ensembl hg19 (Hinxton)ENSG00000179965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179965 [Gene_View]  chr16:30407414-30418595 [Contig_View]  ZNF771 [Vega]
ICGC DataPortalENSG00000179965
TCGA cBioPortalZNF771
AceView (NCBI)ZNF771
Genatlas (Paris)ZNF771
WikiGenes51333
SOURCE (Princeton)ZNF771
Genetics Home Reference (NIH)ZNF771
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF771  -     chr16:30407414-30418595 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF771  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF771 - 16p11.2 [CytoView hg19]  ZNF771 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF771 [Mapview hg19]  ZNF771 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF242768 AK001405 AK311157 AK313930 BC011870
RefSeq transcript (Entrez)NM_001142305 NM_016643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF771
Cluster EST : UnigeneHs.148584 [ NCBI ]
CGAP (NCI)Hs.148584
Alternative Splicing GalleryENSG00000179965
Gene ExpressionZNF771 [ NCBI-GEO ]   ZNF771 [ EBI - ARRAY_EXPRESS ]   ZNF771 [ SEEK ]   ZNF771 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF771 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51333
GTEX Portal (Tissue expression)ZNF771
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L3S4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L3S4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L3S4
Splice isoforms : SwissVarQ7L3S4
PhosPhoSitePlusQ7L3S4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF771
DMDM Disease mutations51333
Blocks (Seattle)ZNF771
SuperfamilyQ7L3S4
Human Protein AtlasENSG00000179965
Peptide AtlasQ7L3S4
HPRD14238
IPIIPI00640047   
Protein Interaction databases
DIP (DOE-UCLA)Q7L3S4
IntAct (EBI)Q7L3S4
FunCoupENSG00000179965
BioGRIDZNF771
STRING (EMBL)ZNF771
ZODIACZNF771
Ontologies - Pathways
QuickGOQ7L3S4
Ontology : AmiGODNA binding  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF771
Atlas of Cancer Signalling NetworkZNF771
Wikipedia pathwaysZNF771
Orthology - Evolution
OrthoDB51333
GeneTree (enSembl)ENSG00000179965
Phylogenetic Trees/Animal Genes : TreeFamZNF771
HOVERGENQ7L3S4
HOGENOMQ7L3S4
Homologs : HomoloGeneZNF771
Homology/Alignments : Family Browser (UCSC)ZNF771
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF771 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF771
dbVarZNF771
ClinVarZNF771
1000_GenomesZNF771 
Exome Variant ServerZNF771
ExAC (Exome Aggregation Consortium)ZNF771 (select the gene name)
Genetic variants : HAPMAP51333
Genomic Variants (DGV)ZNF771 [DGVbeta]
DECIPHERZNF771 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF771 
Mutations
ICGC Data PortalZNF771 
TCGA Data PortalZNF771 
Broad Tumor PortalZNF771
OASIS PortalZNF771 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF771  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF771
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF771
DgiDB (Drug Gene Interaction Database)ZNF771
DoCM (Curated mutations)ZNF771 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF771 (select a term)
intoGenZNF771
Cancer3DZNF771(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF771
Genetic Testing Registry ZNF771
NextProtQ7L3S4 [Medical]
TSGene51333
GENETestsZNF771
Target ValidationZNF771
Huge Navigator ZNF771 [HugePedia]
snp3D : Map Gene to Disease51333
BioCentury BCIQZNF771
ClinGenZNF771
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51333
Chemical/Pharm GKB GenePA162410347
Clinical trialZNF771
Miscellaneous
canSAR (ICR)ZNF771 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF771
EVEXZNF771
GoPubMedZNF771
iHOPZNF771
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:18 CEST 2017

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