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ZNF772 (zinc finger protein 772)

Identity

Alias_symbol (synonym)DKFZp686I1569
Other alias-
HGNC (Hugo) ZNF772
LocusID (NCBI) 400720
Atlas_Id 76390
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57469586 and ends at 57477570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF772 (19q13.43) / VN1R1 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF772   33106
Cards
Entrez_Gene (NCBI)ZNF772  400720  zinc finger protein 772
Aliases
GeneCards (Weizmann)ZNF772
Ensembl hg19 (Hinxton)ENSG00000197128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197128 [Gene_View]  chr19:57469586-57477570 [Contig_View]  ZNF772 [Vega]
ICGC DataPortalENSG00000197128
TCGA cBioPortalZNF772
AceView (NCBI)ZNF772
Genatlas (Paris)ZNF772
WikiGenes400720
SOURCE (Princeton)ZNF772
Genetics Home Reference (NIH)ZNF772
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF772  -     chr19:57469586-57477570 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF772  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF772 - 19q13.43 [CytoView hg19]  ZNF772 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF772 [Mapview hg19]  ZNF772 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293825 AK294941 AK301562 AK302574 BC150292
RefSeq transcript (Entrez)NM_001024596 NM_001144068 NM_001330613
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF772
Cluster EST : UnigeneHs.388810 [ NCBI ]
CGAP (NCI)Hs.388810
Alternative Splicing GalleryENSG00000197128
Gene ExpressionZNF772 [ NCBI-GEO ]   ZNF772 [ EBI - ARRAY_EXPRESS ]   ZNF772 [ SEEK ]   ZNF772 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF772 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400720
GTEX Portal (Tissue expression)ZNF772
Human Protein AtlasENSG00000197128-ZNF772 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DY9
Splice isoforms : SwissVarQ68DY9
PhosPhoSitePlusQ68DY9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF772
DMDM Disease mutations400720
Blocks (Seattle)ZNF772
SuperfamilyQ68DY9
Human Protein Atlas [tissue]ENSG00000197128-ZNF772 [tissue]
Peptide AtlasQ68DY9
HPRD18624
IPIIPI00457228   IPI00816010   IPI00909131   IPI00942723   IPI01015457   IPI00939411   IPI00939955   
Protein Interaction databases
DIP (DOE-UCLA)Q68DY9
IntAct (EBI)Q68DY9
FunCoupENSG00000197128
BioGRIDZNF772
STRING (EMBL)ZNF772
ZODIACZNF772
Ontologies - Pathways
QuickGOQ68DY9
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF772
Atlas of Cancer Signalling NetworkZNF772
Wikipedia pathwaysZNF772
Orthology - Evolution
OrthoDB400720
GeneTree (enSembl)ENSG00000197128
Phylogenetic Trees/Animal Genes : TreeFamZNF772
HOVERGENQ68DY9
HOGENOMQ68DY9
Homologs : HomoloGeneZNF772
Homology/Alignments : Family Browser (UCSC)ZNF772
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF772
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF772 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF772
dbVarZNF772
ClinVarZNF772
1000_GenomesZNF772 
Exome Variant ServerZNF772
ExAC (Exome Aggregation Consortium)ENSG00000197128
GNOMAD BrowserENSG00000197128
Genetic variants : HAPMAP400720
Genomic Variants (DGV)ZNF772 [DGVbeta]
DECIPHERZNF772 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF772 
Mutations
ICGC Data PortalZNF772 
TCGA Data PortalZNF772 
Broad Tumor PortalZNF772
OASIS PortalZNF772 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF772  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF772
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF772
DgiDB (Drug Gene Interaction Database)ZNF772
DoCM (Curated mutations)ZNF772 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF772 (select a term)
intoGenZNF772
Cancer3DZNF772(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF772
Genetic Testing Registry ZNF772
NextProtQ68DY9 [Medical]
TSGene400720
GENETestsZNF772
Target ValidationZNF772
Huge Navigator ZNF772 [HugePedia]
snp3D : Map Gene to Disease400720
BioCentury BCIQZNF772
ClinGenZNF772
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400720
Chemical/Pharm GKB GenePA162410356
Clinical trialZNF772
Miscellaneous
canSAR (ICR)ZNF772 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF772
EVEXZNF772
GoPubMedZNF772
iHOPZNF772
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:54 CET 2017

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