Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF773 (zinc finger protein 773)

Identity

Alias_namesZNF419B
zinc finger protein 419B
Alias_symbol (synonym)MGC4728
Other alias
HGNC (Hugo) ZNF773
LocusID (NCBI) 374928
Atlas_Id 76391
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57499854 and ends at 57508229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF773   30487
Cards
Entrez_Gene (NCBI)ZNF773  374928  zinc finger protein 773
AliasesZNF419B
GeneCards (Weizmann)ZNF773
Ensembl hg19 (Hinxton)ENSG00000152439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152439 [Gene_View]  chr19:57499854-57508229 [Contig_View]  ZNF773 [Vega]
ICGC DataPortalENSG00000152439
TCGA cBioPortalZNF773
AceView (NCBI)ZNF773
Genatlas (Paris)ZNF773
WikiGenes374928
SOURCE (Princeton)ZNF773
Genetics Home Reference (NIH)ZNF773
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF773  -     chr19:57499854-57508229 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF773  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF773 - 19q13.43 [CytoView hg19]  ZNF773 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF773 [Mapview hg19]  ZNF773 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057209 AK160372 BC005167 BX365407 BX382674
RefSeq transcript (Entrez)NM_001304334 NM_001304335 NM_001304336 NM_001304337 NM_198542
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF773
Cluster EST : UnigeneHs.579576 [ NCBI ]
CGAP (NCI)Hs.579576
Alternative Splicing GalleryENSG00000152439
Gene ExpressionZNF773 [ NCBI-GEO ]   ZNF773 [ EBI - ARRAY_EXPRESS ]   ZNF773 [ SEEK ]   ZNF773 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF773 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374928
GTEX Portal (Tissue expression)ZNF773
Human Protein AtlasENSG00000152439-ZNF773 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PK81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PK81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PK81
Splice isoforms : SwissVarQ6PK81
PhosPhoSitePlusQ6PK81
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF773
DMDM Disease mutations374928
Blocks (Seattle)ZNF773
SuperfamilyQ6PK81
Human Protein Atlas [tissue]ENSG00000152439-ZNF773 [tissue]
Peptide AtlasQ6PK81
HPRD14655
IPIIPI00394863   IPI00792734   IPI00745830   
Protein Interaction databases
DIP (DOE-UCLA)Q6PK81
IntAct (EBI)Q6PK81
FunCoupENSG00000152439
BioGRIDZNF773
STRING (EMBL)ZNF773
ZODIACZNF773
Ontologies - Pathways
QuickGOQ6PK81
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF773
Atlas of Cancer Signalling NetworkZNF773
Wikipedia pathwaysZNF773
Orthology - Evolution
OrthoDB374928
GeneTree (enSembl)ENSG00000152439
Phylogenetic Trees/Animal Genes : TreeFamZNF773
HOVERGENQ6PK81
HOGENOMQ6PK81
Homologs : HomoloGeneZNF773
Homology/Alignments : Family Browser (UCSC)ZNF773
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF773
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF773 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF773
dbVarZNF773
ClinVarZNF773
1000_GenomesZNF773 
Exome Variant ServerZNF773
ExAC (Exome Aggregation Consortium)ENSG00000152439
GNOMAD BrowserENSG00000152439
Genetic variants : HAPMAP374928
Genomic Variants (DGV)ZNF773 [DGVbeta]
DECIPHERZNF773 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF773 
Mutations
ICGC Data PortalZNF773 
TCGA Data PortalZNF773 
Broad Tumor PortalZNF773
OASIS PortalZNF773 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF773  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF773
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF773
DgiDB (Drug Gene Interaction Database)ZNF773
DoCM (Curated mutations)ZNF773 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF773 (select a term)
intoGenZNF773
Cancer3DZNF773(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF773
Genetic Testing Registry ZNF773
NextProtQ6PK81 [Medical]
TSGene374928
GENETestsZNF773
Target ValidationZNF773
Huge Navigator ZNF773 [HugePedia]
snp3D : Map Gene to Disease374928
BioCentury BCIQZNF773
ClinGenZNF773
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374928
Chemical/Pharm GKB GenePA162410357
Clinical trialZNF773
Miscellaneous
canSAR (ICR)ZNF773 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF773
EVEXZNF773
GoPubMedZNF773
iHOPZNF773
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:54 CET 2017

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