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ZNF778 (zinc finger protein 778)

Identity

Alias_symbol (synonym)FLJ31875
Other alias-
HGNC (Hugo) ZNF778
LocusID (NCBI) 197320
Atlas_Id 76396
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89217703 and ends at 89229557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF778   26479
LRG (Locus Reference Genomic)LRG_284
Cards
Entrez_Gene (NCBI)ZNF778  197320  zinc finger protein 778
Aliases
GeneCards (Weizmann)ZNF778
Ensembl hg19 (Hinxton)ENSG00000170100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170100 [Gene_View]  chr16:89217703-89229557 [Contig_View]  ZNF778 [Vega]
ICGC DataPortalENSG00000170100
TCGA cBioPortalZNF778
AceView (NCBI)ZNF778
Genatlas (Paris)ZNF778
WikiGenes197320
SOURCE (Princeton)ZNF778
Genetics Home Reference (NIH)ZNF778
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF778  -     chr16:89217703-89229557 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF778  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblZNF778 - 16q24.3 [CytoView hg19]  ZNF778 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIZNF778 [Mapview hg19]  ZNF778 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056437 BC015872 BC125192 BC143524 DA297948
RefSeq transcript (Entrez)NM_001201407 NM_182531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF778
Cluster EST : UnigeneHs.647385 [ NCBI ]
CGAP (NCI)Hs.647385
Alternative Splicing GalleryENSG00000170100
Gene ExpressionZNF778 [ NCBI-GEO ]   ZNF778 [ EBI - ARRAY_EXPRESS ]   ZNF778 [ SEEK ]   ZNF778 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF778 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197320
GTEX Portal (Tissue expression)ZNF778
Human Protein AtlasENSG00000170100-ZNF778 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MU6
Splice isoforms : SwissVarQ96MU6
PhosPhoSitePlusQ96MU6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912    pfam13465   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF778
DMDM Disease mutations197320
Blocks (Seattle)ZNF778
SuperfamilyQ96MU6
Human Protein Atlas [tissue]ENSG00000170100-ZNF778 [tissue]
Peptide AtlasQ96MU6
HPRD08111
IPIIPI00043403   IPI00855904   
Protein Interaction databases
DIP (DOE-UCLA)Q96MU6
IntAct (EBI)Q96MU6
FunCoupENSG00000170100
BioGRIDZNF778
STRING (EMBL)ZNF778
ZODIACZNF778
Ontologies - Pathways
QuickGOQ96MU6
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF778
Atlas of Cancer Signalling NetworkZNF778
Wikipedia pathwaysZNF778
Orthology - Evolution
OrthoDB197320
GeneTree (enSembl)ENSG00000170100
Phylogenetic Trees/Animal Genes : TreeFamZNF778
HOVERGENQ96MU6
HOGENOMQ96MU6
Homologs : HomoloGeneZNF778
Homology/Alignments : Family Browser (UCSC)ZNF778
Gene fusions - Rearrangements
Tumor Fusion PortalZNF778
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF778 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF778
dbVarZNF778
ClinVarZNF778
1000_GenomesZNF778 
Exome Variant ServerZNF778
ExAC (Exome Aggregation Consortium)ENSG00000170100
GNOMAD BrowserENSG00000170100
Genetic variants : HAPMAP197320
Genomic Variants (DGV)ZNF778 [DGVbeta]
DECIPHERZNF778 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF778 
Mutations
ICGC Data PortalZNF778 
TCGA Data PortalZNF778 
Broad Tumor PortalZNF778
OASIS PortalZNF778 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF778  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF778
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ZNF778
DgiDB (Drug Gene Interaction Database)ZNF778
DoCM (Curated mutations)ZNF778 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF778 (select a term)
intoGenZNF778
Cancer3DZNF778(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF778
MedgenZNF778
Genetic Testing Registry ZNF778
NextProtQ96MU6 [Medical]
TSGene197320
GENETestsZNF778
Target ValidationZNF778
Huge Navigator ZNF778 [HugePedia]
snp3D : Map Gene to Disease197320
BioCentury BCIQZNF778
ClinGenZNF778
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197320
Chemical/Pharm GKB GenePA162410400
Clinical trialZNF778
Miscellaneous
canSAR (ICR)ZNF778 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF778
EVEXZNF778
GoPubMedZNF778
iHOPZNF778
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:47 CET 2017

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