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ZNF780A (zinc finger protein 780A)

Identity

Alias_symbol (synonym)ZNF780
Other alias
HGNC (Hugo) ZNF780A
LocusID (NCBI) 284323
Atlas_Id 76397
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40072992 and ends at 40090903 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF780A   27603
Cards
Entrez_Gene (NCBI)ZNF780A  284323  zinc finger protein 780A
AliasesZNF780
GeneCards (Weizmann)ZNF780A
Ensembl hg19 (Hinxton)ENSG00000197782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197782 [Gene_View]  chr19:40072992-40090903 [Contig_View]  ZNF780A [Vega]
ICGC DataPortalENSG00000197782
TCGA cBioPortalZNF780A
AceView (NCBI)ZNF780A
Genatlas (Paris)ZNF780A
WikiGenes284323
SOURCE (Princeton)ZNF780A
Genetics Home Reference (NIH)ZNF780A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF780A  -     chr19:40072992-40090903 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF780A  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF780A - 19q13.2 [CytoView hg19]  ZNF780A - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF780A [Mapview hg19]  ZNF780A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI638558 AK091274 AK131328 AW243188 BC021982
RefSeq transcript (Entrez)NM_001010880 NM_001142577 NM_001142578 NM_001142579
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF780A
Cluster EST : UnigeneHs.115140 [ NCBI ]
CGAP (NCI)Hs.115140
Alternative Splicing GalleryENSG00000197782
Gene ExpressionZNF780A [ NCBI-GEO ]   ZNF780A [ EBI - ARRAY_EXPRESS ]   ZNF780A [ SEEK ]   ZNF780A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF780A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284323
GTEX Portal (Tissue expression)ZNF780A
Human Protein AtlasENSG00000197782-ZNF780A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75290   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75290  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75290
Splice isoforms : SwissVarO75290
PhosPhoSitePlusO75290
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF780A
DMDM Disease mutations284323
Blocks (Seattle)ZNF780A
SuperfamilyO75290
Human Protein Atlas [tissue]ENSG00000197782-ZNF780A [tissue]
Peptide AtlasO75290
HPRD17336
IPIIPI00174885   IPI00807695   IPI00916074   IPI00442215   
Protein Interaction databases
DIP (DOE-UCLA)O75290
IntAct (EBI)O75290
FunCoupENSG00000197782
BioGRIDZNF780A
STRING (EMBL)ZNF780A
ZODIACZNF780A
Ontologies - Pathways
QuickGOO75290
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF780A
Atlas of Cancer Signalling NetworkZNF780A
Wikipedia pathwaysZNF780A
Orthology - Evolution
OrthoDB284323
GeneTree (enSembl)ENSG00000197782
Phylogenetic Trees/Animal Genes : TreeFamZNF780A
HOVERGENO75290
HOGENOMO75290
Homologs : HomoloGeneZNF780A
Homology/Alignments : Family Browser (UCSC)ZNF780A
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF780A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF780A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF780A
dbVarZNF780A
ClinVarZNF780A
1000_GenomesZNF780A 
Exome Variant ServerZNF780A
ExAC (Exome Aggregation Consortium)ENSG00000197782
GNOMAD BrowserENSG00000197782
Genetic variants : HAPMAP284323
Genomic Variants (DGV)ZNF780A [DGVbeta]
DECIPHERZNF780A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF780A 
Mutations
ICGC Data PortalZNF780A 
TCGA Data PortalZNF780A 
Broad Tumor PortalZNF780A
OASIS PortalZNF780A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF780A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF780A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF780A
DgiDB (Drug Gene Interaction Database)ZNF780A
DoCM (Curated mutations)ZNF780A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF780A (select a term)
intoGenZNF780A
Cancer3DZNF780A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF780A
Genetic Testing Registry ZNF780A
NextProtO75290 [Medical]
TSGene284323
GENETestsZNF780A
Target ValidationZNF780A
Huge Navigator ZNF780A [HugePedia]
snp3D : Map Gene to Disease284323
BioCentury BCIQZNF780A
ClinGenZNF780A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284323
Chemical/Pharm GKB GenePA162410417
Clinical trialZNF780A
Miscellaneous
canSAR (ICR)ZNF780A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF780A
EVEXZNF780A
GoPubMedZNF780A
iHOPZNF780A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:37:55 CET 2017

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