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ZNF780B (zinc finger protein 780B)

Identity

Alias_namesZNF779
zinc finger protein 779
Other alias
HGNC (Hugo) ZNF780B
LocusID (NCBI) 163131
Atlas_Id 76398
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40028260 and ends at 40056208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LONP1 (19p13.3) / ZNF780B (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF780B   33109
Cards
Entrez_Gene (NCBI)ZNF780B  163131  zinc finger protein 780B
AliasesZNF779
GeneCards (Weizmann)ZNF780B
Ensembl hg19 (Hinxton)ENSG00000128000 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128000 [Gene_View]  chr19:40028260-40056208 [Contig_View]  ZNF780B [Vega]
ICGC DataPortalENSG00000128000
TCGA cBioPortalZNF780B
AceView (NCBI)ZNF780B
Genatlas (Paris)ZNF780B
WikiGenes163131
SOURCE (Princeton)ZNF780B
Genetics Home Reference (NIH)ZNF780B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF780B  -     chr19:40028260-40056208 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF780B  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF780B - 19q13.2 [CytoView hg19]  ZNF780B - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF780B [Mapview hg19]  ZNF780B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122872 AK127063 BC136960 CB053507
RefSeq transcript (Entrez)NM_001005851
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF780B
Cluster EST : UnigeneHs.101139 [ NCBI ]
CGAP (NCI)Hs.101139
Alternative Splicing GalleryENSG00000128000
Gene ExpressionZNF780B [ NCBI-GEO ]   ZNF780B [ EBI - ARRAY_EXPRESS ]   ZNF780B [ SEEK ]   ZNF780B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF780B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163131
GTEX Portal (Tissue expression)ZNF780B
Human Protein AtlasENSG00000128000-ZNF780B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6R6
Splice isoforms : SwissVarQ9Y6R6
PhosPhoSitePlusQ9Y6R6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF780B
DMDM Disease mutations163131
Blocks (Seattle)ZNF780B
SuperfamilyQ9Y6R6
Human Protein Atlas [tissue]ENSG00000128000-ZNF780B [tissue]
Peptide AtlasQ9Y6R6
HPRD11243
IPIIPI00472426   IPI00927921   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6R6
IntAct (EBI)Q9Y6R6
FunCoupENSG00000128000
BioGRIDZNF780B
STRING (EMBL)ZNF780B
ZODIACZNF780B
Ontologies - Pathways
QuickGOQ9Y6R6
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF780B
Atlas of Cancer Signalling NetworkZNF780B
Wikipedia pathwaysZNF780B
Orthology - Evolution
OrthoDB163131
GeneTree (enSembl)ENSG00000128000
Phylogenetic Trees/Animal Genes : TreeFamZNF780B
HOVERGENQ9Y6R6
HOGENOMQ9Y6R6
Homologs : HomoloGeneZNF780B
Homology/Alignments : Family Browser (UCSC)ZNF780B
Gene fusions - Rearrangements
Tumor Fusion PortalZNF780B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF780B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF780B
dbVarZNF780B
ClinVarZNF780B
1000_GenomesZNF780B 
Exome Variant ServerZNF780B
ExAC (Exome Aggregation Consortium)ENSG00000128000
GNOMAD BrowserENSG00000128000
Genetic variants : HAPMAP163131
Genomic Variants (DGV)ZNF780B [DGVbeta]
DECIPHERZNF780B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF780B 
Mutations
ICGC Data PortalZNF780B 
TCGA Data PortalZNF780B 
Broad Tumor PortalZNF780B
OASIS PortalZNF780B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF780B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF780B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF780B
DgiDB (Drug Gene Interaction Database)ZNF780B
DoCM (Curated mutations)ZNF780B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF780B (select a term)
intoGenZNF780B
Cancer3DZNF780B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF780B
MedgenZNF780B
Genetic Testing Registry ZNF780B
NextProtQ9Y6R6 [Medical]
TSGene163131
GENETestsZNF780B
Target ValidationZNF780B
Huge Navigator ZNF780B [HugePedia]
snp3D : Map Gene to Disease163131
BioCentury BCIQZNF780B
ClinGenZNF780B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163131
Chemical/Pharm GKB GenePA162410426
Clinical trialZNF780B
Miscellaneous
canSAR (ICR)ZNF780B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF780B
EVEXZNF780B
GoPubMedZNF780B
iHOPZNF780B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:00 CET 2017

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