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ZNF782 (zinc finger protein 782)

Identity

Alias_symbol (synonym)FLJ16636
Other alias-
HGNC (Hugo) ZNF782
LocusID (NCBI) 158431
Atlas_Id 76400
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 96816271 and ends at 96854488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF782 (9q22.33) / SYTL2 (11q14.1)ZNF782 (9q22.33) / ZNF510 (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF782   33110
Cards
Entrez_Gene (NCBI)ZNF782  158431  zinc finger protein 782
Aliases
GeneCards (Weizmann)ZNF782
Ensembl hg19 (Hinxton)ENSG00000196597 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196597 [Gene_View]  chr9:96816271-96854488 [Contig_View]  ZNF782 [Vega]
ICGC DataPortalENSG00000196597
TCGA cBioPortalZNF782
AceView (NCBI)ZNF782
Genatlas (Paris)ZNF782
WikiGenes158431
SOURCE (Princeton)ZNF782
Genetics Home Reference (NIH)ZNF782
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF782  -     chr9:96816271-96854488 -  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF782  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblZNF782 - 9q22.33 [CytoView hg19]  ZNF782 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBIZNF782 [Mapview hg19]  ZNF782 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131468 AK302460 AL540705 BC020163 BC023631
RefSeq transcript (Entrez)NM_001001662 NM_001346991 NM_001346993 NM_001346995
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF782
Cluster EST : UnigeneHs.732126 [ NCBI ]
CGAP (NCI)Hs.732126
Alternative Splicing GalleryENSG00000196597
Gene ExpressionZNF782 [ NCBI-GEO ]   ZNF782 [ EBI - ARRAY_EXPRESS ]   ZNF782 [ SEEK ]   ZNF782 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF782 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158431
GTEX Portal (Tissue expression)ZNF782
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMW2
Splice isoforms : SwissVarQ6ZMW2
PhosPhoSitePlusQ6ZMW2
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF782
DMDM Disease mutations158431
Blocks (Seattle)ZNF782
SuperfamilyQ6ZMW2
Human Protein AtlasENSG00000196597
Peptide AtlasQ6ZMW2
HPRD16914
IPIIPI00082524   IPI00945967   IPI00947403   IPI00946379   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMW2
IntAct (EBI)Q6ZMW2
FunCoupENSG00000196597
BioGRIDZNF782
STRING (EMBL)ZNF782
ZODIACZNF782
Ontologies - Pathways
QuickGOQ6ZMW2
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF782
Atlas of Cancer Signalling NetworkZNF782
Wikipedia pathwaysZNF782
Orthology - Evolution
OrthoDB158431
GeneTree (enSembl)ENSG00000196597
Phylogenetic Trees/Animal Genes : TreeFamZNF782
HOVERGENQ6ZMW2
HOGENOMQ6ZMW2
Homologs : HomoloGeneZNF782
Homology/Alignments : Family Browser (UCSC)ZNF782
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF782 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF782
dbVarZNF782
ClinVarZNF782
1000_GenomesZNF782 
Exome Variant ServerZNF782
ExAC (Exome Aggregation Consortium)ZNF782 (select the gene name)
Genetic variants : HAPMAP158431
Genomic Variants (DGV)ZNF782 [DGVbeta]
DECIPHERZNF782 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF782 
Mutations
ICGC Data PortalZNF782 
TCGA Data PortalZNF782 
Broad Tumor PortalZNF782
OASIS PortalZNF782 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF782  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF782
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF782
DgiDB (Drug Gene Interaction Database)ZNF782
DoCM (Curated mutations)ZNF782 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF782 (select a term)
intoGenZNF782
Cancer3DZNF782(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF782
Genetic Testing Registry ZNF782
NextProtQ6ZMW2 [Medical]
TSGene158431
GENETestsZNF782
Target ValidationZNF782
Huge Navigator ZNF782 [HugePedia]
snp3D : Map Gene to Disease158431
BioCentury BCIQZNF782
ClinGenZNF782
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158431
Chemical/Pharm GKB GenePA162410440
Clinical trialZNF782
Miscellaneous
canSAR (ICR)ZNF782 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF782
EVEXZNF782
GoPubMedZNF782
iHOPZNF782
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:19 CEST 2017

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