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ZNF784 (zinc finger protein 784)

Identity

Alias_symbol (synonym)MGC75238
Other alias-
HGNC (Hugo) ZNF784
LocusID (NCBI) 147808
Atlas_Id 76402
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55620741 and ends at 55624575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF784 (19q13.42) / RPGRIP1L (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF784   33111
Cards
Entrez_Gene (NCBI)ZNF784  147808  zinc finger protein 784
Aliases
GeneCards (Weizmann)ZNF784
Ensembl hg19 (Hinxton)ENSG00000179922 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179922 [Gene_View]  chr19:55620741-55624575 [Contig_View]  ZNF784 [Vega]
ICGC DataPortalENSG00000179922
TCGA cBioPortalZNF784
AceView (NCBI)ZNF784
Genatlas (Paris)ZNF784
WikiGenes147808
SOURCE (Princeton)ZNF784
Genetics Home Reference (NIH)ZNF784
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF784  -     chr19:55620741-55624575 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF784  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF784 - 19q13.42 [CytoView hg19]  ZNF784 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF784 [Mapview hg19]  ZNF784 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086055 AK074859 AK309967 BC065822
RefSeq transcript (Entrez)NM_203374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF784
Cluster EST : UnigeneHs.53996 [ NCBI ]
CGAP (NCI)Hs.53996
Alternative Splicing GalleryENSG00000179922
Gene ExpressionZNF784 [ NCBI-GEO ]   ZNF784 [ EBI - ARRAY_EXPRESS ]   ZNF784 [ SEEK ]   ZNF784 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF784 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147808
GTEX Portal (Tissue expression)ZNF784
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCA9
Splice isoforms : SwissVarQ8NCA9
PhosPhoSitePlusQ8NCA9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF784
DMDM Disease mutations147808
Blocks (Seattle)ZNF784
SuperfamilyQ8NCA9
Human Protein AtlasENSG00000179922
Peptide AtlasQ8NCA9
HPRD14076
IPIIPI00168368   IPI00980168   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCA9
IntAct (EBI)Q8NCA9
FunCoupENSG00000179922
BioGRIDZNF784
STRING (EMBL)ZNF784
ZODIACZNF784
Ontologies - Pathways
QuickGOQ8NCA9
Ontology : AmiGOhematopoietic progenitor cell differentiation  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF784
Atlas of Cancer Signalling NetworkZNF784
Wikipedia pathwaysZNF784
Orthology - Evolution
OrthoDB147808
GeneTree (enSembl)ENSG00000179922
Phylogenetic Trees/Animal Genes : TreeFamZNF784
HOVERGENQ8NCA9
HOGENOMQ8NCA9
Homologs : HomoloGeneZNF784
Homology/Alignments : Family Browser (UCSC)ZNF784
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF784 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF784
dbVarZNF784
ClinVarZNF784
1000_GenomesZNF784 
Exome Variant ServerZNF784
ExAC (Exome Aggregation Consortium)ZNF784 (select the gene name)
Genetic variants : HAPMAP147808
Genomic Variants (DGV)ZNF784 [DGVbeta]
DECIPHERZNF784 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF784 
Mutations
ICGC Data PortalZNF784 
TCGA Data PortalZNF784 
Broad Tumor PortalZNF784
OASIS PortalZNF784 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF784  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF784
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF784
DgiDB (Drug Gene Interaction Database)ZNF784
DoCM (Curated mutations)ZNF784 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF784 (select a term)
intoGenZNF784
Cancer3DZNF784(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF784
Genetic Testing Registry ZNF784
NextProtQ8NCA9 [Medical]
TSGene147808
GENETestsZNF784
Huge Navigator ZNF784 [HugePedia]
snp3D : Map Gene to Disease147808
BioCentury BCIQZNF784
ClinGenZNF784
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147808
Chemical/Pharm GKB GenePA162410458
Clinical trialZNF784
Miscellaneous
canSAR (ICR)ZNF784 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF784
EVEXZNF784
GoPubMedZNF784
iHOPZNF784
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:03:51 CEST 2017

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