Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF785 (zinc finger protein 785)

Identity

Alias_symbol (synonym)FLJ32130
Other alias-
HGNC (Hugo) ZNF785
LocusID (NCBI) 146540
Atlas_Id 76403
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30591994 and ends at 30597092 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNCG (10q23.2) / ZNF785 (16p11.2)ZNF785 (16p11.2) / DCX (Xq23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF785   26496
Cards
Entrez_Gene (NCBI)ZNF785  146540  zinc finger protein 785
Aliases
GeneCards (Weizmann)ZNF785
Ensembl hg19 (Hinxton)ENSG00000197162 [Gene_View]  chr16:30591994-30597092 [Contig_View]  ZNF785 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197162 [Gene_View]  chr16:30591994-30597092 [Contig_View]  ZNF785 [Vega]
ICGC DataPortalENSG00000197162
TCGA cBioPortalZNF785
AceView (NCBI)ZNF785
Genatlas (Paris)ZNF785
WikiGenes146540
SOURCE (Princeton)ZNF785
Genetics Home Reference (NIH)ZNF785
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF785  -     chr16:30591994-30597092 -  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF785  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblZNF785 - 16p11.2 [CytoView hg19]  ZNF785 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF785 [Mapview hg19]  ZNF785 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056692 AK292465 AK298848 AK309511 BC040642
RefSeq transcript (Entrez)NM_152458
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)ZNF785
Cluster EST : UnigeneHs.513509 [ NCBI ]
CGAP (NCI)Hs.513509
Alternative Splicing GalleryENSG00000197162
Gene ExpressionZNF785 [ NCBI-GEO ]   ZNF785 [ EBI - ARRAY_EXPRESS ]   ZNF785 [ SEEK ]   ZNF785 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF785 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146540
GTEX Portal (Tissue expression)ZNF785
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K8V0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K8V0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K8V0
Splice isoforms : SwissVarA8K8V0
PhosPhoSitePlusA8K8V0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF785
DMDM Disease mutations146540
Blocks (Seattle)ZNF785
SuperfamilyA8K8V0
Human Protein AtlasENSG00000197162
Peptide AtlasA8K8V0
HPRD08120
IPIIPI00743874   IPI00065551   
Protein Interaction databases
DIP (DOE-UCLA)A8K8V0
IntAct (EBI)A8K8V0
FunCoupENSG00000197162
BioGRIDZNF785
STRING (EMBL)ZNF785
ZODIACZNF785
Ontologies - Pathways
QuickGOA8K8V0
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF785
Atlas of Cancer Signalling NetworkZNF785
Wikipedia pathwaysZNF785
Orthology - Evolution
OrthoDB146540
GeneTree (enSembl)ENSG00000197162
Phylogenetic Trees/Animal Genes : TreeFamZNF785
HOVERGENA8K8V0
HOGENOMA8K8V0
Homologs : HomoloGeneZNF785
Homology/Alignments : Family Browser (UCSC)ZNF785
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF785 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF785
dbVarZNF785
ClinVarZNF785
1000_GenomesZNF785 
Exome Variant ServerZNF785
ExAC (Exome Aggregation Consortium)ZNF785 (select the gene name)
Genetic variants : HAPMAP146540
Genomic Variants (DGV)ZNF785 [DGVbeta]
DECIPHER (Syndromes)16:30591994-30597092  ENSG00000197162
CONAN: Copy Number AnalysisZNF785 
Mutations
ICGC Data PortalZNF785 
TCGA Data PortalZNF785 
Broad Tumor PortalZNF785
OASIS PortalZNF785 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF785  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF785
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF785
DgiDB (Drug Gene Interaction Database)ZNF785
DoCM (Curated mutations)ZNF785 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF785 (select a term)
intoGenZNF785
Cancer3DZNF785(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF785
Genetic Testing Registry ZNF785
NextProtA8K8V0 [Medical]
TSGene146540
GENETestsZNF785
Huge Navigator ZNF785 [HugePedia]
snp3D : Map Gene to Disease146540
BioCentury BCIQZNF785
ClinGenZNF785
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146540
Chemical/Pharm GKB GenePA162410467
Clinical trialZNF785
Miscellaneous
canSAR (ICR)ZNF785 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF785
EVEXZNF785
GoPubMedZNF785
iHOPZNF785
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:54 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.