Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF788 (zinc finger family member 788)

Identity

Alias_symbol (synonym)FLJ46419
Other alias-
HGNC (Hugo) ZNF788
LocusID (NCBI) 388507
Atlas_Id 78106
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12092263 and ends at 12114752 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF788   33112
Cards
Entrez_Gene (NCBI)ZNF788  388507  zinc finger family member 788
Aliases
GeneCards (Weizmann)ZNF788
Ensembl hg19 (Hinxton)ENSG00000214189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214189 [Gene_View]  chr19:12092263-12114752 [Contig_View]  ZNF788 [Vega]
ICGC DataPortalENSG00000214189
TCGA cBioPortalZNF788
AceView (NCBI)ZNF788
Genatlas (Paris)ZNF788
WikiGenes388507
SOURCE (Princeton)ZNF788
Genetics Home Reference (NIH)ZNF788
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF788  -     chr19:12092263-12114752 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF788  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF788 - 19p13.2 [CytoView hg19]  ZNF788 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF788 [Mapview hg19]  ZNF788 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI478464 AK128282 AK128700 BM781919 CN263918
RefSeq transcript (Entrez)NM_001004314 NM_001348163 NM_001348164 NM_001348165
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF788
Cluster EST : UnigeneHs.127473 [ NCBI ]
CGAP (NCI)Hs.127473
Alternative Splicing GalleryENSG00000214189
Gene ExpressionZNF788 [ NCBI-GEO ]   ZNF788 [ EBI - ARRAY_EXPRESS ]   ZNF788 [ SEEK ]   ZNF788 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF788 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388507
GTEX Portal (Tissue expression)ZNF788
Human Protein AtlasENSG00000214189-ZNF788 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQV5
Splice isoforms : SwissVarQ6ZQV5
PhosPhoSitePlusQ6ZQV5
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF788
DMDM Disease mutations388507
Blocks (Seattle)ZNF788
SuperfamilyQ6ZQV5
Human Protein Atlas [tissue]ENSG00000214189-ZNF788 [tissue]
Peptide AtlasQ6ZQV5
HPRD17002
IPIIPI00418724   IPI00956628   IPI00873800   IPI00926142   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQV5
IntAct (EBI)Q6ZQV5
FunCoupENSG00000214189
BioGRIDZNF788
STRING (EMBL)ZNF788
ZODIACZNF788
Ontologies - Pathways
QuickGOQ6ZQV5
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF788
Atlas of Cancer Signalling NetworkZNF788
Wikipedia pathwaysZNF788
Orthology - Evolution
OrthoDB388507
GeneTree (enSembl)ENSG00000214189
Phylogenetic Trees/Animal Genes : TreeFamZNF788
HOVERGENQ6ZQV5
HOGENOMQ6ZQV5
Homologs : HomoloGeneZNF788
Homology/Alignments : Family Browser (UCSC)ZNF788
Gene fusions - Rearrangements
Tumor Fusion PortalZNF788
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF788 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF788
dbVarZNF788
ClinVarZNF788
1000_GenomesZNF788 
Exome Variant ServerZNF788
ExAC (Exome Aggregation Consortium)ENSG00000214189
GNOMAD BrowserENSG00000214189
Genetic variants : HAPMAP388507
Genomic Variants (DGV)ZNF788 [DGVbeta]
DECIPHERZNF788 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF788 
Mutations
ICGC Data PortalZNF788 
TCGA Data PortalZNF788 
Broad Tumor PortalZNF788
OASIS PortalZNF788 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF788  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF788
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF788
DgiDB (Drug Gene Interaction Database)ZNF788
DoCM (Curated mutations)ZNF788 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF788 (select a term)
intoGenZNF788
Cancer3DZNF788(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF788
MedgenZNF788
Genetic Testing Registry ZNF788
NextProtQ6ZQV5 [Medical]
TSGene388507
GENETestsZNF788
Target ValidationZNF788
Huge Navigator ZNF788 [HugePedia]
snp3D : Map Gene to Disease388507
BioCentury BCIQZNF788
ClinGenZNF788
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388507
Chemical/Pharm GKB GenePA166049010
Clinical trialZNF788
Miscellaneous
canSAR (ICR)ZNF788 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF788
EVEXZNF788
GoPubMedZNF788
iHOPZNF788
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:00 CET 2017

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