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ZNF789 (zinc finger protein 789)

Identity

Other alias-
HGNC (Hugo) ZNF789
LocusID (NCBI) 285989
Atlas_Id 54818
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99472892 and ends at 99482325 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF789 (7q22.1) / ZBTB16 (11q23.2)ZNF789 (7q22.1) / ZNF394 (7q22.1)ZNF789 (7q22.1) / ZNF789 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF789   27801
Cards
Entrez_Gene (NCBI)ZNF789  285989  zinc finger protein 789
Aliases
GeneCards (Weizmann)ZNF789
Ensembl hg19 (Hinxton)ENSG00000198556 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198556 [Gene_View]  chr7:99472892-99482325 [Contig_View]  ZNF789 [Vega]
ICGC DataPortalENSG00000198556
TCGA cBioPortalZNF789
AceView (NCBI)ZNF789
Genatlas (Paris)ZNF789
WikiGenes285989
SOURCE (Princeton)ZNF789
Genetics Home Reference (NIH)ZNF789
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF789  -     chr7:99472892-99482325 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF789  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF789 - 7q22.1 [CytoView hg19]  ZNF789 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF789 [Mapview hg19]  ZNF789 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093141 AK131429 AK309467 BC031249 BC050286
RefSeq transcript (Entrez)NM_001013258 NM_001350999 NM_001351000 NM_001351001 NM_001351002 NM_001351004 NM_213603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF789
Cluster EST : UnigeneHs.440384 [ NCBI ]
CGAP (NCI)Hs.440384
Alternative Splicing GalleryENSG00000198556
Gene ExpressionZNF789 [ NCBI-GEO ]   ZNF789 [ EBI - ARRAY_EXPRESS ]   ZNF789 [ SEEK ]   ZNF789 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF789 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285989
GTEX Portal (Tissue expression)ZNF789
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5FWF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5FWF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5FWF6
Splice isoforms : SwissVarQ5FWF6
PhosPhoSitePlusQ5FWF6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF789
DMDM Disease mutations285989
Blocks (Seattle)ZNF789
SuperfamilyQ5FWF6
Human Protein AtlasENSG00000198556
Peptide AtlasQ5FWF6
HPRD14161
IPIIPI00412697   IPI00746127   IPI00927808   IPI00554530   IPI00947107   IPI01009183   IPI00946668   
Protein Interaction databases
DIP (DOE-UCLA)Q5FWF6
IntAct (EBI)Q5FWF6
FunCoupENSG00000198556
BioGRIDZNF789
STRING (EMBL)ZNF789
ZODIACZNF789
Ontologies - Pathways
QuickGOQ5FWF6
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF789
Atlas of Cancer Signalling NetworkZNF789
Wikipedia pathwaysZNF789
Orthology - Evolution
OrthoDB285989
GeneTree (enSembl)ENSG00000198556
Phylogenetic Trees/Animal Genes : TreeFamZNF789
HOVERGENQ5FWF6
HOGENOMQ5FWF6
Homologs : HomoloGeneZNF789
Homology/Alignments : Family Browser (UCSC)ZNF789
Gene fusions - Rearrangements
Fusion : MitelmanZNF789/ZNF394 [7q22.1/7q22.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF789 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF789
dbVarZNF789
ClinVarZNF789
1000_GenomesZNF789 
Exome Variant ServerZNF789
ExAC (Exome Aggregation Consortium)ZNF789 (select the gene name)
Genetic variants : HAPMAP285989
Genomic Variants (DGV)ZNF789 [DGVbeta]
DECIPHERZNF789 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF789 
Mutations
ICGC Data PortalZNF789 
TCGA Data PortalZNF789 
Broad Tumor PortalZNF789
OASIS PortalZNF789 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF789  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF789
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF789
DgiDB (Drug Gene Interaction Database)ZNF789
DoCM (Curated mutations)ZNF789 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF789 (select a term)
intoGenZNF789
Cancer3DZNF789(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF789
Genetic Testing Registry ZNF789
NextProtQ5FWF6 [Medical]
TSGene285989
GENETestsZNF789
Huge Navigator ZNF789 [HugePedia]
snp3D : Map Gene to Disease285989
BioCentury BCIQZNF789
ClinGenZNF789
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285989
Chemical/Pharm GKB GenePA162410492
Clinical trialZNF789
Miscellaneous
canSAR (ICR)ZNF789 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF789
EVEXZNF789
GoPubMedZNF789
iHOPZNF789
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:45:11 CEST 2017

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