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ZNF79 (zinc finger protein 79)

Identity

Alias_nameszinc finger protein 79 (pT7)
Alias_symbol (synonym)pT7
Other alias
HGNC (Hugo) ZNF79
LocusID (NCBI) 7633
Atlas_Id 76405
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 127424374 and ends at 127445372 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF79 (9q33.3) / EVL (14q32.2)ZNF79 (9q33.3) / FAM129B (9q33.3)ZNF79 (9q33.3) / RALGPS1 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF79   13153
Cards
Entrez_Gene (NCBI)ZNF79  7633  zinc finger protein 79
AliasespT7
GeneCards (Weizmann)ZNF79
Ensembl hg19 (Hinxton)ENSG00000196152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196152 [Gene_View]  chr9:127424374-127445372 [Contig_View]  ZNF79 [Vega]
ICGC DataPortalENSG00000196152
TCGA cBioPortalZNF79
AceView (NCBI)ZNF79
Genatlas (Paris)ZNF79
WikiGenes7633
SOURCE (Princeton)ZNF79
Genetics Home Reference (NIH)ZNF79
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF79  -     chr9:127424374-127445372 +  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF79  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblZNF79 - 9q33.3 [CytoView hg19]  ZNF79 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIZNF79 [Mapview hg19]  ZNF79 [Mapview hg38]
OMIM194552   
Gene and transcription
Genbank (Entrez)AI301044 AK054606 AK302284 AK316233 BC062309
RefSeq transcript (Entrez)NM_001286696 NM_001286697 NM_001286698 NM_001322260 NM_007135
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF79
Cluster EST : UnigeneHs.522399 [ NCBI ]
CGAP (NCI)Hs.522399
Alternative Splicing GalleryENSG00000196152
Gene ExpressionZNF79 [ NCBI-GEO ]   ZNF79 [ EBI - ARRAY_EXPRESS ]   ZNF79 [ SEEK ]   ZNF79 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF79 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7633
GTEX Portal (Tissue expression)ZNF79
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15937   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15937  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15937
Splice isoforms : SwissVarQ15937
PhosPhoSitePlusQ15937
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF79
DMDM Disease mutations7633
Blocks (Seattle)ZNF79
SuperfamilyQ15937
Human Protein AtlasENSG00000196152
Peptide AtlasQ15937
HPRD01931
IPIIPI00020499   IPI01012770   
Protein Interaction databases
DIP (DOE-UCLA)Q15937
IntAct (EBI)Q15937
FunCoupENSG00000196152
BioGRIDZNF79
STRING (EMBL)ZNF79
ZODIACZNF79
Ontologies - Pathways
QuickGOQ15937
Ontology : AmiGOmolecular_function  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF79
Atlas of Cancer Signalling NetworkZNF79
Wikipedia pathwaysZNF79
Orthology - Evolution
OrthoDB7633
GeneTree (enSembl)ENSG00000196152
Phylogenetic Trees/Animal Genes : TreeFamZNF79
HOVERGENQ15937
HOGENOMQ15937
Homologs : HomoloGeneZNF79
Homology/Alignments : Family Browser (UCSC)ZNF79
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF79 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF79
dbVarZNF79
ClinVarZNF79
1000_GenomesZNF79 
Exome Variant ServerZNF79
ExAC (Exome Aggregation Consortium)ZNF79 (select the gene name)
Genetic variants : HAPMAP7633
Genomic Variants (DGV)ZNF79 [DGVbeta]
DECIPHERZNF79 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF79 
Mutations
ICGC Data PortalZNF79 
TCGA Data PortalZNF79 
Broad Tumor PortalZNF79
OASIS PortalZNF79 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF79  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF79
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF79
DgiDB (Drug Gene Interaction Database)ZNF79
DoCM (Curated mutations)ZNF79 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF79 (select a term)
intoGenZNF79
Cancer3DZNF79(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194552   
Orphanet
MedgenZNF79
Genetic Testing Registry ZNF79
NextProtQ15937 [Medical]
TSGene7633
GENETestsZNF79
Target ValidationZNF79
Huge Navigator ZNF79 [HugePedia]
snp3D : Map Gene to Disease7633
BioCentury BCIQZNF79
ClinGenZNF79
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7633
Chemical/Pharm GKB GenePA37727
Clinical trialZNF79
Miscellaneous
canSAR (ICR)ZNF79 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF79
EVEXZNF79
GoPubMedZNF79
iHOPZNF79
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:20 CEST 2017

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