Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF790 (zinc finger protein 790)

Identity

Alias_symbol (synonym)MGC62100
FLJ20350
Other alias-
HGNC (Hugo) ZNF790
LocusID (NCBI) 388536
Atlas_Id 76406
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36818322 and ends at 36850787 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF790 (19q13.12) / RHPN2 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF790   33114
Cards
Entrez_Gene (NCBI)ZNF790  388536  zinc finger protein 790
Aliases
GeneCards (Weizmann)ZNF790
Ensembl hg19 (Hinxton)ENSG00000197863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197863 [Gene_View]  chr19:36818322-36850787 [Contig_View]  ZNF790 [Vega]
ICGC DataPortalENSG00000197863
TCGA cBioPortalZNF790
AceView (NCBI)ZNF790
Genatlas (Paris)ZNF790
WikiGenes388536
SOURCE (Princeton)ZNF790
Genetics Home Reference (NIH)ZNF790
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF790  -     chr19:36818322-36850787 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF790  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF790 - 19q13.12 [CytoView hg19]  ZNF790 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF790 [Mapview hg19]  ZNF790 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI808437 AK297474 BC057245 BF132049 BM473790
RefSeq transcript (Entrez)NM_001242800 NM_001242801 NM_001242802 NM_206894
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF790
Cluster EST : UnigeneHs.734830 [ NCBI ]
CGAP (NCI)Hs.734830
Alternative Splicing GalleryENSG00000197863
Gene ExpressionZNF790 [ NCBI-GEO ]   ZNF790 [ EBI - ARRAY_EXPRESS ]   ZNF790 [ SEEK ]   ZNF790 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF790 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388536
GTEX Portal (Tissue expression)ZNF790
Human Protein AtlasENSG00000197863-ZNF790 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PG37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PG37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PG37
Splice isoforms : SwissVarQ6PG37
PhosPhoSitePlusQ6PG37
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF790
DMDM Disease mutations388536
Blocks (Seattle)ZNF790
SuperfamilyQ6PG37
Human Protein Atlas [tissue]ENSG00000197863-ZNF790 [tissue]
Peptide AtlasQ6PG37
HPRD17566
IPIIPI00410131   IPI00982837   IPI00981556   IPI00982130   
Protein Interaction databases
DIP (DOE-UCLA)Q6PG37
IntAct (EBI)Q6PG37
FunCoupENSG00000197863
BioGRIDZNF790
STRING (EMBL)ZNF790
ZODIACZNF790
Ontologies - Pathways
QuickGOQ6PG37
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF790
Atlas of Cancer Signalling NetworkZNF790
Wikipedia pathwaysZNF790
Orthology - Evolution
OrthoDB388536
GeneTree (enSembl)ENSG00000197863
Phylogenetic Trees/Animal Genes : TreeFamZNF790
HOVERGENQ6PG37
HOGENOMQ6PG37
Homologs : HomoloGeneZNF790
Homology/Alignments : Family Browser (UCSC)ZNF790
Gene fusions - Rearrangements
Tumor Fusion PortalZNF790
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF790 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF790
dbVarZNF790
ClinVarZNF790
1000_GenomesZNF790 
Exome Variant ServerZNF790
ExAC (Exome Aggregation Consortium)ENSG00000197863
GNOMAD BrowserENSG00000197863
Genetic variants : HAPMAP388536
Genomic Variants (DGV)ZNF790 [DGVbeta]
DECIPHERZNF790 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF790 
Mutations
ICGC Data PortalZNF790 
TCGA Data PortalZNF790 
Broad Tumor PortalZNF790
OASIS PortalZNF790 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF790  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF790
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF790
DgiDB (Drug Gene Interaction Database)ZNF790
DoCM (Curated mutations)ZNF790 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF790 (select a term)
intoGenZNF790
Cancer3DZNF790(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF790
MedgenZNF790
Genetic Testing Registry ZNF790
NextProtQ6PG37 [Medical]
TSGene388536
GENETestsZNF790
Target ValidationZNF790
Huge Navigator ZNF790 [HugePedia]
snp3D : Map Gene to Disease388536
BioCentury BCIQZNF790
ClinGenZNF790
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388536
Chemical/Pharm GKB GenePA162410507
Clinical trialZNF790
Miscellaneous
canSAR (ICR)ZNF790 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF790
EVEXZNF790
GoPubMedZNF790
iHOPZNF790
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:01 CET 2017

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