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ZNF793 (zinc finger protein 793)

Identity

Other alias-
HGNC (Hugo) ZNF793
LocusID (NCBI) 390927
Atlas_Id 76410
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37506939 and ends at 37543337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF793 (19q13.12) / ZYG11B (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF793   33115
Cards
Entrez_Gene (NCBI)ZNF793  390927  zinc finger protein 793
Aliases
GeneCards (Weizmann)ZNF793
Ensembl hg19 (Hinxton)ENSG00000188227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188227 [Gene_View]  chr19:37506939-37543337 [Contig_View]  ZNF793 [Vega]
ICGC DataPortalENSG00000188227
TCGA cBioPortalZNF793
AceView (NCBI)ZNF793
Genatlas (Paris)ZNF793
WikiGenes390927
SOURCE (Princeton)ZNF793
Genetics Home Reference (NIH)ZNF793
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF793  -     chr19:37506939-37543337 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF793  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF793 - 19q13.12 [CytoView hg19]  ZNF793 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF793 [Mapview hg19]  ZNF793 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131417 AK303740 BC150303 BE219465 BU683546
RefSeq transcript (Entrez)NM_001013659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF793
Cluster EST : UnigeneHs.568010 [ NCBI ]
CGAP (NCI)Hs.568010
Alternative Splicing GalleryENSG00000188227
Gene ExpressionZNF793 [ NCBI-GEO ]   ZNF793 [ EBI - ARRAY_EXPRESS ]   ZNF793 [ SEEK ]   ZNF793 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF793 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390927
GTEX Portal (Tissue expression)ZNF793
Human Protein AtlasENSG00000188227-ZNF793 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN11
Splice isoforms : SwissVarQ6ZN11
PhosPhoSitePlusQ6ZN11
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF793
DMDM Disease mutations390927
Blocks (Seattle)ZNF793
SuperfamilyQ6ZN11
Human Protein Atlas [tissue]ENSG00000188227-ZNF793 [tissue]
Peptide AtlasQ6ZN11
HPRD18402
IPIIPI00939796   IPI01010877   IPI00418560   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN11
IntAct (EBI)Q6ZN11
FunCoupENSG00000188227
BioGRIDZNF793
STRING (EMBL)ZNF793
ZODIACZNF793
Ontologies - Pathways
QuickGOQ6ZN11
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF793
Atlas of Cancer Signalling NetworkZNF793
Wikipedia pathwaysZNF793
Orthology - Evolution
OrthoDB390927
GeneTree (enSembl)ENSG00000188227
Phylogenetic Trees/Animal Genes : TreeFamZNF793
HOVERGENQ6ZN11
HOGENOMQ6ZN11
Homologs : HomoloGeneZNF793
Homology/Alignments : Family Browser (UCSC)ZNF793
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF793
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF793 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF793
dbVarZNF793
ClinVarZNF793
1000_GenomesZNF793 
Exome Variant ServerZNF793
ExAC (Exome Aggregation Consortium)ENSG00000188227
GNOMAD BrowserENSG00000188227
Genetic variants : HAPMAP390927
Genomic Variants (DGV)ZNF793 [DGVbeta]
DECIPHERZNF793 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF793 
Mutations
ICGC Data PortalZNF793 
TCGA Data PortalZNF793 
Broad Tumor PortalZNF793
OASIS PortalZNF793 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF793  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF793
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF793
DgiDB (Drug Gene Interaction Database)ZNF793
DoCM (Curated mutations)ZNF793 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF793 (select a term)
intoGenZNF793
Cancer3DZNF793(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF793
Genetic Testing Registry ZNF793
NextProtQ6ZN11 [Medical]
TSGene390927
GENETestsZNF793
Target ValidationZNF793
Huge Navigator ZNF793 [HugePedia]
snp3D : Map Gene to Disease390927
BioCentury BCIQZNF793
ClinGenZNF793
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390927
Chemical/Pharm GKB GenePA162410548
Clinical trialZNF793
Miscellaneous
canSAR (ICR)ZNF793 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF793
EVEXZNF793
GoPubMedZNF793
iHOPZNF793
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:58 CET 2017

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