Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF799 (zinc finger protein 799)

Identity

Alias_namesZNF842
zinc finger protein 842
Alias_symbol (synonym)HIT-40
MGC71805
Other alias
HGNC (Hugo) ZNF799
LocusID (NCBI) 90576
Atlas_Id 76412
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12500828 and ends at 12512088 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF799   28071
Cards
Entrez_Gene (NCBI)ZNF799  90576  zinc finger protein 799
AliasesHIT-40; ZNF842
GeneCards (Weizmann)ZNF799
Ensembl hg19 (Hinxton)ENSG00000196466 [Gene_View]  chr19:12500828-12512088 [Contig_View]  ZNF799 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196466 [Gene_View]  chr19:12500828-12512088 [Contig_View]  ZNF799 [Vega]
ICGC DataPortalENSG00000196466
TCGA cBioPortalZNF799
AceView (NCBI)ZNF799
Genatlas (Paris)ZNF799
WikiGenes90576
SOURCE (Princeton)ZNF799
Genetics Home Reference (NIH)ZNF799
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF799  -     chr19:12500828-12512088 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF799  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZNF799 - 19p13.2 [CytoView hg19]  ZNF799 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF799 [Mapview hg19]  ZNF799 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027660 AL832890 BC009517 CB988846 DB198205
RefSeq transcript (Entrez)NM_001080821 NM_203381
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZNF799
Cluster EST : UnigeneHs.546637 [ NCBI ]
CGAP (NCI)Hs.546637
Alternative Splicing GalleryENSG00000196466
Gene ExpressionZNF799 [ NCBI-GEO ]   ZNF799 [ EBI - ARRAY_EXPRESS ]   ZNF799 [ SEEK ]   ZNF799 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF799 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90576
GTEX Portal (Tissue expression)ZNF799
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GE5
Splice isoforms : SwissVarQ96GE5
PhosPhoSitePlusQ96GE5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF799
DMDM Disease mutations90576
Blocks (Seattle)ZNF799
SuperfamilyQ96GE5
Human Protein AtlasENSG00000196466
Peptide AtlasQ96GE5
IPIIPI00924752   IPI00647241   IPI00042444   IPI00924507   
Protein Interaction databases
DIP (DOE-UCLA)Q96GE5
IntAct (EBI)Q96GE5
FunCoupENSG00000196466
BioGRIDZNF799
STRING (EMBL)ZNF799
ZODIACZNF799
Ontologies - Pathways
QuickGOQ96GE5
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF799
Atlas of Cancer Signalling NetworkZNF799
Wikipedia pathwaysZNF799
Orthology - Evolution
OrthoDB90576
GeneTree (enSembl)ENSG00000196466
Phylogenetic Trees/Animal Genes : TreeFamZNF799
HOVERGENQ96GE5
HOGENOMQ96GE5
Homologs : HomoloGeneZNF799
Homology/Alignments : Family Browser (UCSC)ZNF799
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF799 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF799
dbVarZNF799
ClinVarZNF799
1000_GenomesZNF799 
Exome Variant ServerZNF799
ExAC (Exome Aggregation Consortium)ZNF799 (select the gene name)
Genetic variants : HAPMAP90576
Genomic Variants (DGV)ZNF799 [DGVbeta]
DECIPHER (Syndromes)19:12500828-12512088  ENSG00000196466
CONAN: Copy Number AnalysisZNF799 
Mutations
ICGC Data PortalZNF799 
TCGA Data PortalZNF799 
Broad Tumor PortalZNF799
OASIS PortalZNF799 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF799  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF799
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF799
DgiDB (Drug Gene Interaction Database)ZNF799
DoCM (Curated mutations)ZNF799 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF799 (select a term)
intoGenZNF799
Cancer3DZNF799(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF799
Genetic Testing Registry ZNF799
NextProtQ96GE5 [Medical]
TSGene90576
GENETestsZNF799
Huge Navigator ZNF799 [HugePedia]
snp3D : Map Gene to Disease90576
BioCentury BCIQZNF799
ClinGenZNF799
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90576
Chemical/Pharm GKB GenePA162410569
Clinical trialZNF799
Miscellaneous
canSAR (ICR)ZNF799 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF799
EVEXZNF799
GoPubMedZNF799
iHOPZNF799
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:56 CET 2017

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