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ZNF8 (zinc finger protein 8)

Identity

Alias_nameszinc finger protein 8 (clone HF.18)
Alias_symbol (synonym)HF.18
Zfp128
Other alias
HGNC (Hugo) ZNF8
LocusID (NCBI) 7554
Atlas_Id 76413
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58278952 and ends at 58295888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZC3H4 (19q13.32) / ZNF8 (19q13.43)ZNF543 (19q13.43) / ZNF8 (19q13.43)ZNF8 (19q13.43) / SSBP4 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF8   13154
Cards
Entrez_Gene (NCBI)ZNF8  7554  zinc finger protein 8
AliasesHF.18; Zfp128
GeneCards (Weizmann)ZNF8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:58278952-58295888 [Contig_View]  ZNF8 [Vega]
TCGA cBioPortalZNF8
AceView (NCBI)ZNF8
Genatlas (Paris)ZNF8
WikiGenes7554
SOURCE (Princeton)ZNF8
Genetics Home Reference (NIH)ZNF8
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF8  -     chr19:58278952-58295888 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF8  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF8 - 19q13.43 [CytoView hg19]  ZNF8 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF8 [Mapview hg19]  ZNF8 [Mapview hg38]
OMIM194532   
Gene and transcription
Genbank (Entrez)AK093110 AK225825 AK299716 BC039323 EU446717
RefSeq transcript (Entrez)NM_021089
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF8
Cluster EST : UnigeneHs.713519 [ NCBI ]
CGAP (NCI)Hs.713519
Gene ExpressionZNF8 [ NCBI-GEO ]   ZNF8 [ EBI - ARRAY_EXPRESS ]   ZNF8 [ SEEK ]   ZNF8 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7554
GTEX Portal (Tissue expression)ZNF8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17098   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17098  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17098
Splice isoforms : SwissVarP17098
PhosPhoSitePlusP17098
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF8
DMDM Disease mutations7554
Blocks (Seattle)ZNF8
SuperfamilyP17098
Peptide AtlasP17098
HPRD01919
IPIIPI00419402   IPI00910785   IPI00847396   
Protein Interaction databases
DIP (DOE-UCLA)P17098
IntAct (EBI)P17098
BioGRIDZNF8
STRING (EMBL)ZNF8
ZODIACZNF8
Ontologies - Pathways
QuickGOP17098
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  transcription, DNA-templated  zinc ion binding  BMP signaling pathway  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  transcription, DNA-templated  zinc ion binding  BMP signaling pathway  
NDEx NetworkZNF8
Atlas of Cancer Signalling NetworkZNF8
Wikipedia pathwaysZNF8
Orthology - Evolution
OrthoDB7554
Phylogenetic Trees/Animal Genes : TreeFamZNF8
HOVERGENP17098
HOGENOMP17098
Homologs : HomoloGeneZNF8
Homology/Alignments : Family Browser (UCSC)ZNF8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF8
dbVarZNF8
ClinVarZNF8
1000_GenomesZNF8 
Exome Variant ServerZNF8
ExAC (Exome Aggregation Consortium)ZNF8 (select the gene name)
Genetic variants : HAPMAP7554
Genomic Variants (DGV)ZNF8 [DGVbeta]
DECIPHERZNF8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF8 
Mutations
ICGC Data PortalZNF8 
TCGA Data PortalZNF8 
Broad Tumor PortalZNF8
OASIS PortalZNF8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF8
DgiDB (Drug Gene Interaction Database)ZNF8
DoCM (Curated mutations)ZNF8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF8 (select a term)
intoGenZNF8
Cancer3DZNF8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194532   
Orphanet
MedgenZNF8
Genetic Testing Registry ZNF8
NextProtP17098 [Medical]
TSGene7554
GENETestsZNF8
Target ValidationZNF8
Huge Navigator ZNF8 [HugePedia]
snp3D : Map Gene to Disease7554
BioCentury BCIQZNF8
ClinGenZNF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7554
Chemical/Pharm GKB GenePA37728
Clinical trialZNF8
Miscellaneous
canSAR (ICR)ZNF8 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF8
EVEXZNF8
GoPubMedZNF8
iHOPZNF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:23 CEST 2017

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