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ZNF80 (zinc finger protein 80)

Identity

Alias_nameszinc finger protein 80 (pT17)
Alias_symbol (synonym)pT17
Other alias
HGNC (Hugo) ZNF80
LocusID (NCBI) 7634
Atlas_Id 76414
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 114234631 and ends at 114237578 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF80   13155
Cards
Entrez_Gene (NCBI)ZNF80  7634  zinc finger protein 80
AliasespT17
GeneCards (Weizmann)ZNF80
Ensembl hg19 (Hinxton)ENSG00000174255 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174255 [Gene_View]  chr3:114234631-114237578 [Contig_View]  ZNF80 [Vega]
ICGC DataPortalENSG00000174255
TCGA cBioPortalZNF80
AceView (NCBI)ZNF80
Genatlas (Paris)ZNF80
WikiGenes7634
SOURCE (Princeton)ZNF80
Genetics Home Reference (NIH)ZNF80
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF80  -     chr3:114234631-114237578 -  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF80  -     3q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF80 - 3q13.31 [CytoView hg19]  ZNF80 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF80 [Mapview hg19]  ZNF80 [Mapview hg38]
OMIM194553   
Gene and transcription
Genbank (Entrez)BC069606 BC069826 BC129925 CA420107 X65233
RefSeq transcript (Entrez)NM_007136
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF80
Cluster EST : UnigeneHs.724900 [ NCBI ]
CGAP (NCI)Hs.724900
Alternative Splicing GalleryENSG00000174255
Gene ExpressionZNF80 [ NCBI-GEO ]   ZNF80 [ EBI - ARRAY_EXPRESS ]   ZNF80 [ SEEK ]   ZNF80 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7634
GTEX Portal (Tissue expression)ZNF80
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51504   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51504  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51504
Splice isoforms : SwissVarP51504
PhosPhoSitePlusP51504
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF80
DMDM Disease mutations7634
Blocks (Seattle)ZNF80
SuperfamilyP51504
Human Protein AtlasENSG00000174255
Peptide AtlasP51504
HPRD01932
IPIIPI00019234   
Protein Interaction databases
DIP (DOE-UCLA)P51504
IntAct (EBI)P51504
FunCoupENSG00000174255
BioGRIDZNF80
STRING (EMBL)ZNF80
ZODIACZNF80
Ontologies - Pathways
QuickGOP51504
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF80
Atlas of Cancer Signalling NetworkZNF80
Wikipedia pathwaysZNF80
Orthology - Evolution
OrthoDB7634
GeneTree (enSembl)ENSG00000174255
Phylogenetic Trees/Animal Genes : TreeFamZNF80
HOVERGENP51504
HOGENOMP51504
Homologs : HomoloGeneZNF80
Homology/Alignments : Family Browser (UCSC)ZNF80
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF80
dbVarZNF80
ClinVarZNF80
1000_GenomesZNF80 
Exome Variant ServerZNF80
ExAC (Exome Aggregation Consortium)ZNF80 (select the gene name)
Genetic variants : HAPMAP7634
Genomic Variants (DGV)ZNF80 [DGVbeta]
DECIPHERZNF80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF80 
Mutations
ICGC Data PortalZNF80 
TCGA Data PortalZNF80 
Broad Tumor PortalZNF80
OASIS PortalZNF80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF80
DgiDB (Drug Gene Interaction Database)ZNF80
DoCM (Curated mutations)ZNF80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF80 (select a term)
intoGenZNF80
Cancer3DZNF80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194553   
Orphanet
MedgenZNF80
Genetic Testing Registry ZNF80
NextProtP51504 [Medical]
TSGene7634
GENETestsZNF80
Target ValidationZNF80
Huge Navigator ZNF80 [HugePedia]
snp3D : Map Gene to Disease7634
BioCentury BCIQZNF80
ClinGenZNF80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7634
Chemical/Pharm GKB GenePA37729
Clinical trialZNF80
Miscellaneous
canSAR (ICR)ZNF80 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF80
EVEXZNF80
GoPubMedZNF80
iHOPZNF80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:23 CEST 2017

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