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ZNF800 (zinc finger protein 800)

Identity

Other alias-
HGNC (Hugo) ZNF800
LocusID (NCBI) 168850
Atlas_Id 76415
Location 7q31.33  [Link to chromosome band 7q31]
Location_base_pair Starts at 127370043 and ends at 127392724 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF800 (7q31.33) / SND1 (7q32.1)ZNF800 (7q31.33) / TANK (2q24.2)ZNF800 (7q31.33) / UBA2 (19q13.11)
ZNF800 (7q31.33) / ZNF800 (7q31.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF800   27267
Cards
Entrez_Gene (NCBI)ZNF800  168850  zinc finger protein 800
Aliases
GeneCards (Weizmann)ZNF800
Ensembl hg19 (Hinxton)ENSG00000048405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000048405 [Gene_View]  chr7:127370043-127392724 [Contig_View]  ZNF800 [Vega]
ICGC DataPortalENSG00000048405
TCGA cBioPortalZNF800
AceView (NCBI)ZNF800
Genatlas (Paris)ZNF800
WikiGenes168850
SOURCE (Princeton)ZNF800
Genetics Home Reference (NIH)ZNF800
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF800  -     chr7:127370043-127392724 -  7q31.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF800  -     7q31.33   [Description]    (hg19-Feb_2009)
EnsemblZNF800 - 7q31.33 [CytoView hg19]  ZNF800 - 7q31.33 [CytoView hg38]
Mapping of homologs : NCBIZNF800 [Mapview hg19]  ZNF800 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF218032 AK125291 AK297946 AK309674 BC037348
RefSeq transcript (Entrez)NM_176814
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF800
Cluster EST : UnigeneHs.667035 [ NCBI ]
CGAP (NCI)Hs.667035
Alternative Splicing GalleryENSG00000048405
Gene ExpressionZNF800 [ NCBI-GEO ]   ZNF800 [ EBI - ARRAY_EXPRESS ]   ZNF800 [ SEEK ]   ZNF800 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF800 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168850
GTEX Portal (Tissue expression)ZNF800
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TB10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TB10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TB10
Splice isoforms : SwissVarQ2TB10
PhosPhoSitePlusQ2TB10
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2_11 (PF16622)   
Domain families : Pfam (NCBI)pfam16622   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF800
DMDM Disease mutations168850
Blocks (Seattle)ZNF800
SuperfamilyQ2TB10
Human Protein AtlasENSG00000048405
Peptide AtlasQ2TB10
HPRD14112
IPIIPI00396098   IPI00644173   IPI00657940   IPI00657898   IPI00790428   
Protein Interaction databases
DIP (DOE-UCLA)Q2TB10
IntAct (EBI)Q2TB10
FunCoupENSG00000048405
BioGRIDZNF800
STRING (EMBL)ZNF800
ZODIACZNF800
Ontologies - Pathways
QuickGOQ2TB10
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF800
Atlas of Cancer Signalling NetworkZNF800
Wikipedia pathwaysZNF800
Orthology - Evolution
OrthoDB168850
GeneTree (enSembl)ENSG00000048405
Phylogenetic Trees/Animal Genes : TreeFamZNF800
HOVERGENQ2TB10
HOGENOMQ2TB10
Homologs : HomoloGeneZNF800
Homology/Alignments : Family Browser (UCSC)ZNF800
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF800 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF800
dbVarZNF800
ClinVarZNF800
1000_GenomesZNF800 
Exome Variant ServerZNF800
ExAC (Exome Aggregation Consortium)ZNF800 (select the gene name)
Genetic variants : HAPMAP168850
Genomic Variants (DGV)ZNF800 [DGVbeta]
DECIPHERZNF800 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF800 
Mutations
ICGC Data PortalZNF800 
TCGA Data PortalZNF800 
Broad Tumor PortalZNF800
OASIS PortalZNF800 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF800  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF800
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF800
DgiDB (Drug Gene Interaction Database)ZNF800
DoCM (Curated mutations)ZNF800 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF800 (select a term)
intoGenZNF800
Cancer3DZNF800(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF800
Genetic Testing Registry ZNF800
NextProtQ2TB10 [Medical]
TSGene168850
GENETestsZNF800
Target ValidationZNF800
Huge Navigator ZNF800 [HugePedia]
snp3D : Map Gene to Disease168850
BioCentury BCIQZNF800
ClinGenZNF800
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168850
Chemical/Pharm GKB GenePA162410582
Clinical trialZNF800
Miscellaneous
canSAR (ICR)ZNF800 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF800
EVEXZNF800
GoPubMedZNF800
iHOPZNF800
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:22 CEST 2017

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