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ZNF804A (zinc finger protein 804A)

Identity

Alias_namesC2orf10
Other alias
HGNC (Hugo) ZNF804A
LocusID (NCBI) 91752
Atlas_Id 76416
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 184598366 and ends at 184939487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF804A (2q32.1) / CNTN1 (12q12)ZNF804A (2q32.1) / IRF2 (4q35.1)ZNF804A (2q32.1) / MICU3 (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF804A   21711
Cards
Entrez_Gene (NCBI)ZNF804A  91752  zinc finger protein 804A
AliasesC2orf10
GeneCards (Weizmann)ZNF804A
Ensembl hg19 (Hinxton)ENSG00000170396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170396 [Gene_View]  chr2:184598366-184939487 [Contig_View]  ZNF804A [Vega]
ICGC DataPortalENSG00000170396
TCGA cBioPortalZNF804A
AceView (NCBI)ZNF804A
Genatlas (Paris)ZNF804A
WikiGenes91752
SOURCE (Princeton)ZNF804A
Genetics Home Reference (NIH)ZNF804A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF804A  -     chr2:184598366-184939487 +  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF804A  -     2q32.1   [Description]    (hg19-Feb_2009)
EnsemblZNF804A - 2q32.1 [CytoView hg19]  ZNF804A - 2q32.1 [CytoView hg38]
Mapping of homologs : NCBIZNF804A [Mapview hg19]  ZNF804A [Mapview hg38]
OMIM612282   
Gene and transcription
Genbank (Entrez)AF052145 AK055275 AK127762 AK131402 AK295280
RefSeq transcript (Entrez)NM_194250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF804A
Cluster EST : UnigeneHs.159528 [ NCBI ]
CGAP (NCI)Hs.159528
Alternative Splicing GalleryENSG00000170396
Gene ExpressionZNF804A [ NCBI-GEO ]   ZNF804A [ EBI - ARRAY_EXPRESS ]   ZNF804A [ SEEK ]   ZNF804A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF804A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91752
GTEX Portal (Tissue expression)ZNF804A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z570   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z570  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z570
Splice isoforms : SwissVarQ7Z570
PhosPhoSitePlusQ7Z570
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2_jaz   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Conserved Domain (NCBI)ZNF804A
DMDM Disease mutations91752
Blocks (Seattle)ZNF804A
SuperfamilyQ7Z570
Human Protein AtlasENSG00000170396
Peptide AtlasQ7Z570
HPRD12804
IPIIPI00375560   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z570
IntAct (EBI)Q7Z570
FunCoupENSG00000170396
BioGRIDZNF804A
STRING (EMBL)ZNF804A
ZODIACZNF804A
Ontologies - Pathways
QuickGOQ7Z570
Ontology : AmiGOnucleic acid binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  metal ion binding  
NDEx NetworkZNF804A
Atlas of Cancer Signalling NetworkZNF804A
Wikipedia pathwaysZNF804A
Orthology - Evolution
OrthoDB91752
GeneTree (enSembl)ENSG00000170396
Phylogenetic Trees/Animal Genes : TreeFamZNF804A
HOVERGENQ7Z570
HOGENOMQ7Z570
Homologs : HomoloGeneZNF804A
Homology/Alignments : Family Browser (UCSC)ZNF804A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF804A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF804A
dbVarZNF804A
ClinVarZNF804A
1000_GenomesZNF804A 
Exome Variant ServerZNF804A
ExAC (Exome Aggregation Consortium)ZNF804A (select the gene name)
Genetic variants : HAPMAP91752
Genomic Variants (DGV)ZNF804A [DGVbeta]
DECIPHERZNF804A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF804A 
Mutations
ICGC Data PortalZNF804A 
TCGA Data PortalZNF804A 
Broad Tumor PortalZNF804A
OASIS PortalZNF804A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF804A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF804A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF804A
DgiDB (Drug Gene Interaction Database)ZNF804A
DoCM (Curated mutations)ZNF804A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF804A (select a term)
intoGenZNF804A
Cancer3DZNF804A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612282   
Orphanet
MedgenZNF804A
Genetic Testing Registry ZNF804A
NextProtQ7Z570 [Medical]
TSGene91752
GENETestsZNF804A
Target ValidationZNF804A
Huge Navigator ZNF804A [HugePedia]
snp3D : Map Gene to Disease91752
BioCentury BCIQZNF804A
ClinGenZNF804A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91752
Chemical/Pharm GKB GenePA162410599
Clinical trialZNF804A
Miscellaneous
canSAR (ICR)ZNF804A (select the gene name)
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF804A
EVEXZNF804A
GoPubMedZNF804A
iHOPZNF804A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:22 CEST 2017

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