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ZNF804A (zinc finger protein 804A)

Identity

Alias (NCBI)C2orf10
HGNC (Hugo) ZNF804A
HGNC Previous nameC2orf10
LocusID (NCBI) 91752
Atlas_Id 76416
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 184598529 and ends at 184939491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF804A (2q32.1) / CNTN1 (12q12)ZNF804A (2q32.1) / IRF2 (4q35.1)ZNF804A (2q32.1) / MICU3 (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF804A   21711
Cards
Entrez_Gene (NCBI)ZNF804A    zinc finger protein 804A
AliasesC2orf10
GeneCards (Weizmann)ZNF804A
Ensembl hg19 (Hinxton)ENSG00000170396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170396 [Gene_View]  ENSG00000170396 [Sequence]  chr2:184598529-184939491 [Contig_View]  ZNF804A [Vega]
ICGC DataPortalENSG00000170396
TCGA cBioPortalZNF804A
AceView (NCBI)ZNF804A
Genatlas (Paris)ZNF804A
SOURCE (Princeton)ZNF804A
Genetics Home Reference (NIH)ZNF804A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF804A  -     chr2:184598529-184939491 +  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF804A  -     2q32.1   [Description]    (hg19-Feb_2009)
GoldenPathZNF804A - 2q32.1 [CytoView hg19]  ZNF804A - 2q32.1 [CytoView hg38]
ImmunoBaseENSG00000170396
Genome Data Viewer NCBIZNF804A [Mapview hg19]  
OMIM612282   
Gene and transcription
Genbank (Entrez)AF052145 AK055275 AK127762 AK131402 AK295280
RefSeq transcript (Entrez)NM_194250
Consensus coding sequences : CCDS (NCBI)ZNF804A
Gene ExpressionZNF804A [ NCBI-GEO ]   ZNF804A [ EBI - ARRAY_EXPRESS ]   ZNF804A [ SEEK ]   ZNF804A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF804A [ Firebrowse - Broad ]
GenevisibleExpression of ZNF804A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91752
GTEX Portal (Tissue expression)ZNF804A
Human Protein AtlasENSG00000170396-ZNF804A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z570   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z570  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z570
PhosPhoSitePlusQ7Z570
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Znf_C2H2_jaz    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Conserved Domain (NCBI)ZNF804A
SuperfamilyQ7Z570
AlphaFold pdb e-kbQ7Z570   
Human Protein Atlas [tissue]ENSG00000170396-ZNF804A [tissue]
HPRD12804
Protein Interaction databases
DIP (DOE-UCLA)Q7Z570
IntAct (EBI)Q7Z570
BioGRIDZNF804A
STRING (EMBL)ZNF804A
ZODIACZNF804A
Ontologies - Pathways
QuickGOQ7Z570
Ontology : AmiGOmolecular_function  nucleus  nucleus  cytoplasm  plasma membrane  positive regulation of gene expression  regulation of neuron projection development  positive regulation of neuron projection development  growth cone  neuronal cell body  dendritic spine  dendritic shaft  metal ion binding  presynapse  postsynapse  dendritic microtubule  positive regulation of dendritic spine maintenance  
Ontology : EGO-EBImolecular_function  nucleus  nucleus  cytoplasm  plasma membrane  positive regulation of gene expression  regulation of neuron projection development  positive regulation of neuron projection development  growth cone  neuronal cell body  dendritic spine  dendritic shaft  metal ion binding  presynapse  postsynapse  dendritic microtubule  positive regulation of dendritic spine maintenance  
NDEx NetworkZNF804A
Atlas of Cancer Signalling NetworkZNF804A
Wikipedia pathwaysZNF804A
Orthology - Evolution
OrthoDB91752
GeneTree (enSembl)ENSG00000170396
Phylogenetic Trees/Animal Genes : TreeFamZNF804A
Homologs : HomoloGeneZNF804A
Homology/Alignments : Family Browser (UCSC)ZNF804A
Gene fusions - Rearrangements
Fusion : QuiverZNF804A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF804A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF804A
dbVarZNF804A
ClinVarZNF804A
MonarchZNF804A
1000_GenomesZNF804A 
Exome Variant ServerZNF804A
GNOMAD BrowserENSG00000170396
Varsome BrowserZNF804A
ACMGZNF804A variants
VarityQ7Z570
Genomic Variants (DGV)ZNF804A [DGVbeta]
DECIPHERZNF804A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF804A 
Mutations
ICGC Data PortalZNF804A 
TCGA Data PortalZNF804A 
Broad Tumor PortalZNF804A
OASIS PortalZNF804A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF804A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF804A
Mutations and Diseases : HGMDZNF804A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF804A
DgiDB (Drug Gene Interaction Database)ZNF804A
DoCM (Curated mutations)ZNF804A
CIViC (Clinical Interpretations of Variants in Cancer)ZNF804A
Cancer3DZNF804A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612282   
Orphanet
DisGeNETZNF804A
MedgenZNF804A
Genetic Testing Registry ZNF804A
NextProtQ7Z570 [Medical]
GENETestsZNF804A
Target ValidationZNF804A
Huge Navigator ZNF804A [HugePedia]
ClinGenZNF804A
Clinical trials, drugs, therapy
MyCancerGenomeZNF804A
Protein Interactions : CTDZNF804A
Pharm GKB GenePA162410599
PharosQ7Z570
Clinical trialZNF804A
Miscellaneous
canSAR (ICR)ZNF804A
HarmonizomeZNF804A
DataMed IndexZNF804A
Probes
Litterature
PubMed122 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF804A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:32 CEST 2021

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