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ZNF804B (zinc finger protein 804B)

Identity

Alias_nameszinc finger 804B
Alias_symbol (synonym)FLJ32110
Other alias-
HGNC (Hugo) ZNF804B
LocusID (NCBI) 219578
Atlas_Id 76417
Location 7q21.13  [Link to chromosome band 7q21]
Location_base_pair Starts at 88388682 and ends at 88966371 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DOLPP1 (9q34.11) / ZNF804B (7q21.13)RPL28 (19q13.42) / ZNF804B (7q21.13)ZNF804B (7q21.13) / KCNA6 (12p13.32)
ZNF804B (7q21.13) / PLG (6q26)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF804B   21958
Cards
Entrez_Gene (NCBI)ZNF804B  219578  zinc finger protein 804B
Aliases
GeneCards (Weizmann)ZNF804B
Ensembl hg19 (Hinxton)ENSG00000182348 [Gene_View]  chr7:88388682-88966371 [Contig_View]  ZNF804B [Vega]
Ensembl hg38 (Hinxton)ENSG00000182348 [Gene_View]  chr7:88388682-88966371 [Contig_View]  ZNF804B [Vega]
ICGC DataPortalENSG00000182348
TCGA cBioPortalZNF804B
AceView (NCBI)ZNF804B
Genatlas (Paris)ZNF804B
WikiGenes219578
SOURCE (Princeton)ZNF804B
Genetics Home Reference (NIH)ZNF804B
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF804B  -     chr7:88388682-88966371 +  7q21.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF804B  -     7q21.13   [Description]    (hg38-Dec_2013)
EnsemblZNF804B - 7q21.13 [CytoView hg19]  ZNF804B - 7q21.13 [CytoView hg38]
Mapping of homologs : NCBIZNF804B [Mapview hg19]  ZNF804B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056672 AY295769 BC140826 BC140829
RefSeq transcript (Entrez)NM_181646
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ZNF804B
Cluster EST : UnigeneHs.684410 [ NCBI ]
CGAP (NCI)Hs.684410
Alternative Splicing GalleryENSG00000182348
Gene ExpressionZNF804B [ NCBI-GEO ]   ZNF804B [ EBI - ARRAY_EXPRESS ]   ZNF804B [ SEEK ]   ZNF804B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF804B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219578
GTEX Portal (Tissue expression)ZNF804B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D1E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D1E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D1E1
Splice isoforms : SwissVarA4D1E1
PhosPhoSitePlusA4D1E1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2_jaz   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF804B
DMDM Disease mutations219578
Blocks (Seattle)ZNF804B
SuperfamilyA4D1E1
Human Protein AtlasENSG00000182348
Peptide AtlasA4D1E1
HPRD08721
IPIIPI00328308   
Protein Interaction databases
DIP (DOE-UCLA)A4D1E1
IntAct (EBI)A4D1E1
FunCoupENSG00000182348
BioGRIDZNF804B
STRING (EMBL)ZNF804B
ZODIACZNF804B
Ontologies - Pathways
QuickGOA4D1E1
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkZNF804B
Atlas of Cancer Signalling NetworkZNF804B
Wikipedia pathwaysZNF804B
Orthology - Evolution
OrthoDB219578
GeneTree (enSembl)ENSG00000182348
Phylogenetic Trees/Animal Genes : TreeFamZNF804B
HOVERGENA4D1E1
HOGENOMA4D1E1
Homologs : HomoloGeneZNF804B
Homology/Alignments : Family Browser (UCSC)ZNF804B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF804B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF804B
dbVarZNF804B
ClinVarZNF804B
1000_GenomesZNF804B 
Exome Variant ServerZNF804B
ExAC (Exome Aggregation Consortium)ZNF804B (select the gene name)
Genetic variants : HAPMAP219578
Genomic Variants (DGV)ZNF804B [DGVbeta]
DECIPHER (Syndromes)7:88388682-88966371  ENSG00000182348
CONAN: Copy Number AnalysisZNF804B 
Mutations
ICGC Data PortalZNF804B 
TCGA Data PortalZNF804B 
Broad Tumor PortalZNF804B
OASIS PortalZNF804B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF804B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF804B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF804B
DgiDB (Drug Gene Interaction Database)ZNF804B
DoCM (Curated mutations)ZNF804B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF804B (select a term)
intoGenZNF804B
Cancer3DZNF804B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF804B
Genetic Testing Registry ZNF804B
NextProtA4D1E1 [Medical]
TSGene219578
GENETestsZNF804B
Huge Navigator ZNF804B [HugePedia]
snp3D : Map Gene to Disease219578
BioCentury BCIQZNF804B
ClinGenZNF804B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219578
Chemical/Pharm GKB GenePA162410600
Clinical trialZNF804B
Miscellaneous
canSAR (ICR)ZNF804B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF804B
EVEXZNF804B
GoPubMedZNF804B
iHOPZNF804B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:57 CET 2017

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