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ZNF808 (zinc finger protein 808)

Identity

Other alias-
HGNC (Hugo) ZNF808
LocusID (NCBI) 388558
Atlas_Id 76419
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52527656 and ends at 52556050 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF808   33230
Cards
Entrez_Gene (NCBI)ZNF808  388558  zinc finger protein 808
Aliases
GeneCards (Weizmann)ZNF808
Ensembl hg19 (Hinxton)ENSG00000198482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198482 [Gene_View]  chr19:52527656-52556050 [Contig_View]  ZNF808 [Vega]
ICGC DataPortalENSG00000198482
TCGA cBioPortalZNF808
AceView (NCBI)ZNF808
Genatlas (Paris)ZNF808
WikiGenes388558
SOURCE (Princeton)ZNF808
Genetics Home Reference (NIH)ZNF808
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF808  -     chr19:52527656-52556050 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF808  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF808 - 19q13.41 [CytoView hg19]  ZNF808 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF808 [Mapview hg19]  ZNF808 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC017109 BC033230 BC130351 BC130353 CN411633
RefSeq transcript (Entrez)NM_001039886 NM_001321424 NM_001321425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF808
Cluster EST : UnigeneHs.729294 [ NCBI ]
CGAP (NCI)Hs.729294
Alternative Splicing GalleryENSG00000198482
Gene ExpressionZNF808 [ NCBI-GEO ]   ZNF808 [ EBI - ARRAY_EXPRESS ]   ZNF808 [ SEEK ]   ZNF808 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF808 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388558
GTEX Portal (Tissue expression)ZNF808
Human Protein AtlasENSG00000198482-ZNF808 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4W9
Splice isoforms : SwissVarQ8N4W9
PhosPhoSitePlusQ8N4W9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF808
DMDM Disease mutations388558
Blocks (Seattle)ZNF808
SuperfamilyQ8N4W9
Human Protein Atlas [tissue]ENSG00000198482-ZNF808 [tissue]
Peptide AtlasQ8N4W9
IPIIPI00877173   IPI00900379   IPI00385456   IPI00947547   IPI00946610   IPI00945056   IPI00945177   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4W9
IntAct (EBI)Q8N4W9
FunCoupENSG00000198482
BioGRIDZNF808
STRING (EMBL)ZNF808
ZODIACZNF808
Ontologies - Pathways
QuickGOQ8N4W9
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF808
Atlas of Cancer Signalling NetworkZNF808
Wikipedia pathwaysZNF808
Orthology - Evolution
OrthoDB388558
GeneTree (enSembl)ENSG00000198482
Phylogenetic Trees/Animal Genes : TreeFamZNF808
HOVERGENQ8N4W9
HOGENOMQ8N4W9
Homologs : HomoloGeneZNF808
Homology/Alignments : Family Browser (UCSC)ZNF808
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF808
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF808 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF808
dbVarZNF808
ClinVarZNF808
1000_GenomesZNF808 
Exome Variant ServerZNF808
ExAC (Exome Aggregation Consortium)ENSG00000198482
GNOMAD BrowserENSG00000198482
Genetic variants : HAPMAP388558
Genomic Variants (DGV)ZNF808 [DGVbeta]
DECIPHERZNF808 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF808 
Mutations
ICGC Data PortalZNF808 
TCGA Data PortalZNF808 
Broad Tumor PortalZNF808
OASIS PortalZNF808 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF808  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF808
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF808
DgiDB (Drug Gene Interaction Database)ZNF808
DoCM (Curated mutations)ZNF808 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF808 (select a term)
intoGenZNF808
Cancer3DZNF808(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF808
Genetic Testing Registry ZNF808
NextProtQ8N4W9 [Medical]
TSGene388558
GENETestsZNF808
Target ValidationZNF808
Huge Navigator ZNF808 [HugePedia]
snp3D : Map Gene to Disease388558
BioCentury BCIQZNF808
ClinGenZNF808
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388558
Chemical/Pharm GKB GenePA162410633
Clinical trialZNF808
Miscellaneous
canSAR (ICR)ZNF808 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF808
EVEXZNF808
GoPubMedZNF808
iHOPZNF808
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:01 CET 2017

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