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ZNF813 (zinc finger protein 813)

Identity

Alias_symbol (synonym)FLJ16542
Other alias-
HGNC (Hugo) ZNF813
LocusID (NCBI) 126017
Atlas_Id 76422
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53467735 and ends at 53494292 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF813   33257
Cards
Entrez_Gene (NCBI)ZNF813  126017  zinc finger protein 813
Aliases
GeneCards (Weizmann)ZNF813
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:53467735-53494292 [Contig_View]  ZNF813 [Vega]
TCGA cBioPortalZNF813
AceView (NCBI)ZNF813
Genatlas (Paris)ZNF813
WikiGenes126017
SOURCE (Princeton)ZNF813
Genetics Home Reference (NIH)ZNF813
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF813  -     chr19:53467735-53494292 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF813  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF813 - 19q13.42 [CytoView hg19]  ZNF813 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF813 [Mapview hg19]  ZNF813 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091460 AK131422 DB066632 DB235327 DR006226
RefSeq transcript (Entrez)NM_001004301
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF813
Cluster EST : UnigeneHs.710780 [ NCBI ]
CGAP (NCI)Hs.710780
Gene ExpressionZNF813 [ NCBI-GEO ]   ZNF813 [ EBI - ARRAY_EXPRESS ]   ZNF813 [ SEEK ]   ZNF813 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF813 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126017
GTEX Portal (Tissue expression)ZNF813
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN06
Splice isoforms : SwissVarQ6ZN06
PhosPhoSitePlusQ6ZN06
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF813
DMDM Disease mutations126017
Blocks (Seattle)ZNF813
SuperfamilyQ6ZN06
Peptide AtlasQ6ZN06
HPRD13367
IPIIPI00419458   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN06
IntAct (EBI)Q6ZN06
BioGRIDZNF813
STRING (EMBL)ZNF813
ZODIACZNF813
Ontologies - Pathways
QuickGOQ6ZN06
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF813
Atlas of Cancer Signalling NetworkZNF813
Wikipedia pathwaysZNF813
Orthology - Evolution
OrthoDB126017
Phylogenetic Trees/Animal Genes : TreeFamZNF813
HOVERGENQ6ZN06
HOGENOMQ6ZN06
Homologs : HomoloGeneZNF813
Homology/Alignments : Family Browser (UCSC)ZNF813
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF813 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF813
dbVarZNF813
ClinVarZNF813
1000_GenomesZNF813 
Exome Variant ServerZNF813
ExAC (Exome Aggregation Consortium)ZNF813 (select the gene name)
Genetic variants : HAPMAP126017
Genomic Variants (DGV)ZNF813 [DGVbeta]
DECIPHERZNF813 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF813 
Mutations
ICGC Data PortalZNF813 
TCGA Data PortalZNF813 
Broad Tumor PortalZNF813
OASIS PortalZNF813 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF813  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF813
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF813
DgiDB (Drug Gene Interaction Database)ZNF813
DoCM (Curated mutations)ZNF813 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF813 (select a term)
intoGenZNF813
Cancer3DZNF813(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF813
Genetic Testing Registry ZNF813
NextProtQ6ZN06 [Medical]
TSGene126017
GENETestsZNF813
Target ValidationZNF813
Huge Navigator ZNF813 [HugePedia]
snp3D : Map Gene to Disease126017
BioCentury BCIQZNF813
ClinGenZNF813
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126017
Chemical/Pharm GKB GenePA162410661
Clinical trialZNF813
Miscellaneous
canSAR (ICR)ZNF813 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF813
EVEXZNF813
GoPubMedZNF813
iHOPZNF813
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:23 CEST 2017

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