Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF816 (zinc finger protein 816)

Identity

Alias_namesZNF816A
zinc finger protein 816A
Other alias
HGNC (Hugo) ZNF816
LocusID (NCBI) 125893
Atlas_Id 76425
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52949379 and ends at 52962911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF816   26995
Cards
Entrez_Gene (NCBI)ZNF816  125893  zinc finger protein 816
AliasesZNF816A
GeneCards (Weizmann)ZNF816
Ensembl hg19 (Hinxton)ENSG00000180257 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180257 [Gene_View]  chr19:52949379-52962911 [Contig_View]  ZNF816 [Vega]
ICGC DataPortalENSG00000180257
TCGA cBioPortalZNF816
AceView (NCBI)ZNF816
Genatlas (Paris)ZNF816
WikiGenes125893
SOURCE (Princeton)ZNF816
Genetics Home Reference (NIH)ZNF816
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF816  -     chr19:52949379-52962911 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF816  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF816 - 19q13.41 [CytoView hg19]  ZNF816 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF816 [Mapview hg19]  ZNF816 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA884369 AK291990 AL713804 BC063805 BC105739
RefSeq transcript (Entrez)NM_001031665 NM_001202456 NM_001202457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF816
Cluster EST : UnigeneHs.655592 [ NCBI ]
CGAP (NCI)Hs.655592
Alternative Splicing GalleryENSG00000180257
Gene ExpressionZNF816 [ NCBI-GEO ]   ZNF816 [ EBI - ARRAY_EXPRESS ]   ZNF816 [ SEEK ]   ZNF816 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF816 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125893
GTEX Portal (Tissue expression)ZNF816
Human Protein AtlasENSG00000180257-ZNF816 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VGE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VGE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VGE8
Splice isoforms : SwissVarQ0VGE8
PhosPhoSitePlusQ0VGE8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF816
DMDM Disease mutations125893
Blocks (Seattle)ZNF816
SuperfamilyQ0VGE8
Human Protein Atlas [tissue]ENSG00000180257-ZNF816 [tissue]
Peptide AtlasQ0VGE8
HPRD18722
IPIIPI00472354   
Protein Interaction databases
DIP (DOE-UCLA)Q0VGE8
IntAct (EBI)Q0VGE8
FunCoupENSG00000180257
BioGRIDZNF816
STRING (EMBL)ZNF816
ZODIACZNF816
Ontologies - Pathways
QuickGOQ0VGE8
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF816
Atlas of Cancer Signalling NetworkZNF816
Wikipedia pathwaysZNF816
Orthology - Evolution
OrthoDB125893
GeneTree (enSembl)ENSG00000180257
Phylogenetic Trees/Animal Genes : TreeFamZNF816
HOVERGENQ0VGE8
HOGENOMQ0VGE8
Homologs : HomoloGeneZNF816
Homology/Alignments : Family Browser (UCSC)ZNF816
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF816
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF816 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF816
dbVarZNF816
ClinVarZNF816
1000_GenomesZNF816 
Exome Variant ServerZNF816
ExAC (Exome Aggregation Consortium)ENSG00000180257
GNOMAD BrowserENSG00000180257
Genetic variants : HAPMAP125893
Genomic Variants (DGV)ZNF816 [DGVbeta]
DECIPHERZNF816 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF816 
Mutations
ICGC Data PortalZNF816 
TCGA Data PortalZNF816 
Broad Tumor PortalZNF816
OASIS PortalZNF816 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF816  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF816
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF816
DgiDB (Drug Gene Interaction Database)ZNF816
DoCM (Curated mutations)ZNF816 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF816 (select a term)
intoGenZNF816
Cancer3DZNF816(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF816
Genetic Testing Registry ZNF816
NextProtQ0VGE8 [Medical]
TSGene125893
GENETestsZNF816
Target ValidationZNF816
Huge Navigator ZNF816 [HugePedia]
snp3D : Map Gene to Disease125893
BioCentury BCIQZNF816
ClinGenZNF816
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125893
Chemical/Pharm GKB GenePA165394953
Clinical trialZNF816
Miscellaneous
canSAR (ICR)ZNF816 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF816
EVEXZNF816
GoPubMedZNF816
iHOPZNF816
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:38:02 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.