Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF823 (zinc finger protein 823)

Identity

Alias (NCBI)HSZFP36
HGNC (Hugo) ZNF823
HGNC Alias symbHSZFP36
HGNC Alias nameZFP 36 for a zinc finger protein
LocusID (NCBI) 55552
Atlas_Id 76429
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11721265 and ends at 11739009 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PACSIN2 (22q13.2) / ZNF823 (19p13.2)ZNF823 (19p13.2) / VAV1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  ZNF823/VAV1 (19p13)
t(19;22)(p13;q13) PACSIN2/ZNF823

External links

Nomenclature
HGNC (Hugo)ZNF823   30936
Cards
Entrez_Gene (NCBI)ZNF823    zinc finger protein 823
AliasesHSZFP36
GeneCards (Weizmann)ZNF823
Ensembl hg19 (Hinxton)ENSG00000197933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197933 [Gene_View]  ENSG00000197933 [Sequence]  chr19:11721265-11739009 [Contig_View]  ZNF823 [Vega]
ICGC DataPortalENSG00000197933
TCGA cBioPortalZNF823
AceView (NCBI)ZNF823
Genatlas (Paris)ZNF823
SOURCE (Princeton)ZNF823
Genetics Home Reference (NIH)ZNF823
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF823  -     chr19:11721265-11739009 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF823  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF823 - 19p13.2 [CytoView hg19]  ZNF823 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000197933
genome Data Viewer NCBIZNF823 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK300579 AK303213 AK308189 BC052597 BC063560
RefSeq transcript (Entrez)NM_001080493 NM_001297610 NM_017507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF823
Alternative Splicing GalleryENSG00000197933
Gene ExpressionZNF823 [ NCBI-GEO ]   ZNF823 [ EBI - ARRAY_EXPRESS ]   ZNF823 [ SEEK ]   ZNF823 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF823 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF823 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55552
GTEX Portal (Tissue expression)ZNF823
Human Protein AtlasENSG00000197933-ZNF823 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16415   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16415  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16415
Splice isoforms : SwissVarP16415
PhosPhoSitePlusP16415
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF823
Blocks (Seattle)ZNF823
SuperfamilyP16415
Human Protein Atlas [tissue]ENSG00000197933-ZNF823 [tissue]
Peptide AtlasP16415
IPIIPI00174902   IPI01015354   IPI00924495   IPI00927592   
Protein Interaction databases
DIP (DOE-UCLA)P16415
IntAct (EBI)P16415
BioGRIDZNF823
STRING (EMBL)ZNF823
ZODIACZNF823
Ontologies - Pathways
QuickGOP16415
Ontology : AmiGODNA binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF823
Atlas of Cancer Signalling NetworkZNF823
Wikipedia pathwaysZNF823
Orthology - Evolution
OrthoDB55552
GeneTree (enSembl)ENSG00000197933
Phylogenetic Trees/Animal Genes : TreeFamZNF823
HOGENOMP16415
Homologs : HomoloGeneZNF823
Homology/Alignments : Family Browser (UCSC)ZNF823
Gene fusions - Rearrangements
Fusion : QuiverZNF823
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF823 [hg38]
dbVarZNF823
ClinVarZNF823
MonarchZNF823
1000_GenomesZNF823 
Exome Variant ServerZNF823
GNOMAD BrowserENSG00000197933
Varsome BrowserZNF823
Genomic Variants (DGV)ZNF823 [DGVbeta]
DECIPHERZNF823 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF823 
Mutations
ICGC Data PortalZNF823 
TCGA Data PortalZNF823 
Broad Tumor PortalZNF823
OASIS PortalZNF823 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF823  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF823
Mutations and Diseases : HGMDZNF823
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF823
DgiDB (Drug Gene Interaction Database)ZNF823
DoCM (Curated mutations)ZNF823 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF823 (select a term)
intoGenZNF823
Cancer3DZNF823(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF823
MedgenZNF823
Genetic Testing Registry ZNF823
NextProtP16415 [Medical]
GENETestsZNF823
Target ValidationZNF823
Huge Navigator ZNF823 [HugePedia]
ClinGenZNF823
Clinical trials, drugs, therapy
MyCancerGenomeZNF823
Protein Interactions : CTD
Pharm GKB GenePA162410690
Clinical trialZNF823
Miscellaneous
canSAR (ICR)ZNF823 (select the gene name)
HarmonizomeZNF823
DataMed IndexZNF823
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF823
EVEXZNF823
GoPubMedZNF823
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:37:00 CET 2020
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