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ZNF823 (zinc finger protein 823)

Identity

Alias_symbol (synonym)HSZFP36
Other alias
HGNC (Hugo) ZNF823
LocusID (NCBI) 55552
Atlas_Id 76429
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11832080 and ends at 11849824 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PACSIN2 (22q13.2) / ZNF823 (19p13.2)ZNF823 (19p13.2) / VAV1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF823   30936
Cards
Entrez_Gene (NCBI)ZNF823  55552  zinc finger protein 823
AliasesHSZFP36
GeneCards (Weizmann)ZNF823
Ensembl hg19 (Hinxton)ENSG00000197933 [Gene_View]  chr19:11832080-11849824 [Contig_View]  ZNF823 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197933 [Gene_View]  chr19:11832080-11849824 [Contig_View]  ZNF823 [Vega]
ICGC DataPortalENSG00000197933
TCGA cBioPortalZNF823
AceView (NCBI)ZNF823
Genatlas (Paris)ZNF823
WikiGenes55552
SOURCE (Princeton)ZNF823
Genetics Home Reference (NIH)ZNF823
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF823  -     chr19:11832080-11849824 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF823  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZNF823 - 19p13.2 [CytoView hg19]  ZNF823 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF823 [Mapview hg19]  ZNF823 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300579 AK303213 AK308189 BC052597 BC063560
RefSeq transcript (Entrez)NM_001080493 NM_001297610 NM_017507
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZNF823
Cluster EST : UnigeneHs.142167 [ NCBI ]
CGAP (NCI)Hs.142167
Alternative Splicing GalleryENSG00000197933
Gene ExpressionZNF823 [ NCBI-GEO ]   ZNF823 [ EBI - ARRAY_EXPRESS ]   ZNF823 [ SEEK ]   ZNF823 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF823 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55552
GTEX Portal (Tissue expression)ZNF823
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16415   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16415  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16415
Splice isoforms : SwissVarP16415
PhosPhoSitePlusP16415
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF823
DMDM Disease mutations55552
Blocks (Seattle)ZNF823
SuperfamilyP16415
Human Protein AtlasENSG00000197933
Peptide AtlasP16415
IPIIPI00174902   IPI01015354   IPI00924495   IPI00927592   
Protein Interaction databases
DIP (DOE-UCLA)P16415
IntAct (EBI)P16415
FunCoupENSG00000197933
BioGRIDZNF823
STRING (EMBL)ZNF823
ZODIACZNF823
Ontologies - Pathways
QuickGOP16415
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF823
Atlas of Cancer Signalling NetworkZNF823
Wikipedia pathwaysZNF823
Orthology - Evolution
OrthoDB55552
GeneTree (enSembl)ENSG00000197933
Phylogenetic Trees/Animal Genes : TreeFamZNF823
HOVERGENP16415
HOGENOMP16415
Homologs : HomoloGeneZNF823
Homology/Alignments : Family Browser (UCSC)ZNF823
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF823 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF823
dbVarZNF823
ClinVarZNF823
1000_GenomesZNF823 
Exome Variant ServerZNF823
ExAC (Exome Aggregation Consortium)ZNF823 (select the gene name)
Genetic variants : HAPMAP55552
Genomic Variants (DGV)ZNF823 [DGVbeta]
DECIPHER (Syndromes)19:11832080-11849824  ENSG00000197933
CONAN: Copy Number AnalysisZNF823 
Mutations
ICGC Data PortalZNF823 
TCGA Data PortalZNF823 
Broad Tumor PortalZNF823
OASIS PortalZNF823 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF823  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF823
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF823
DgiDB (Drug Gene Interaction Database)ZNF823
DoCM (Curated mutations)ZNF823 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF823 (select a term)
intoGenZNF823
Cancer3DZNF823(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF823
Genetic Testing Registry ZNF823
NextProtP16415 [Medical]
TSGene55552
GENETestsZNF823
Huge Navigator ZNF823 [HugePedia]
snp3D : Map Gene to Disease55552
BioCentury BCIQZNF823
ClinGenZNF823
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55552
Chemical/Pharm GKB GenePA162410690
Clinical trialZNF823
Miscellaneous
canSAR (ICR)ZNF823 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF823
EVEXZNF823
GoPubMedZNF823
iHOPZNF823
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:00 CET 2017

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