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ZNF827 (zinc finger protein 827)

Identity

Other alias-
HGNC (Hugo) ZNF827
LocusID (NCBI) 152485
Atlas_Id 76431
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 145757627 and ends at 145938960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCE1 (4q31.21) / ZNF827 (4q31.21)AHNAK (11q12.3) / ZNF827 (4q31.21)BGN (Xq28) / ZNF827 (4q31.21)
COL4A1 (13q34) / ZNF827 (4q31.21)RPL18 (19q13.33) / ZNF827 (4q31.21)SDC3 (1p35.2) / ZNF827 (4q31.21)
VPS9D1 (16q24.3) / ZNF827 (4q31.21)C16orf7 ZNF827RPL18 ZNF827

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF827   27193
Cards
Entrez_Gene (NCBI)ZNF827  152485  zinc finger protein 827
Aliases
GeneCards (Weizmann)ZNF827
Ensembl hg19 (Hinxton)ENSG00000151612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151612 [Gene_View]  chr4:145757627-145938960 [Contig_View]  ZNF827 [Vega]
ICGC DataPortalENSG00000151612
TCGA cBioPortalZNF827
AceView (NCBI)ZNF827
Genatlas (Paris)ZNF827
WikiGenes152485
SOURCE (Princeton)ZNF827
Genetics Home Reference (NIH)ZNF827
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF827  -     chr4:145757627-145938960 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF827  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblZNF827 - 4q31.21 [CytoView hg19]  ZNF827 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIZNF827 [Mapview hg19]  ZNF827 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB074279 AF450485 AI694534 AK056492 AK091130
RefSeq transcript (Entrez)NM_001306215 NM_178835
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF827
Cluster EST : UnigeneHs.633543 [ NCBI ]
CGAP (NCI)Hs.633543
Alternative Splicing GalleryENSG00000151612
Gene ExpressionZNF827 [ NCBI-GEO ]   ZNF827 [ EBI - ARRAY_EXPRESS ]   ZNF827 [ SEEK ]   ZNF827 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF827 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152485
GTEX Portal (Tissue expression)ZNF827
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17R98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17R98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17R98
Splice isoforms : SwissVarQ17R98
PhosPhoSitePlusQ17R98
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF827
DMDM Disease mutations152485
Blocks (Seattle)ZNF827
SuperfamilyQ17R98
Human Protein AtlasENSG00000151612
Peptide AtlasQ17R98
HPRD14095
IPIIPI00889152   IPI00968160   IPI00871260   IPI01018856   IPI00966019   IPI00964673   
Protein Interaction databases
DIP (DOE-UCLA)Q17R98
IntAct (EBI)Q17R98
FunCoupENSG00000151612
BioGRIDZNF827
STRING (EMBL)ZNF827
ZODIACZNF827
Ontologies - Pathways
QuickGOQ17R98
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF827
Atlas of Cancer Signalling NetworkZNF827
Wikipedia pathwaysZNF827
Orthology - Evolution
OrthoDB152485
GeneTree (enSembl)ENSG00000151612
Phylogenetic Trees/Animal Genes : TreeFamZNF827
HOVERGENQ17R98
HOGENOMQ17R98
Homologs : HomoloGeneZNF827
Homology/Alignments : Family Browser (UCSC)ZNF827
Gene fusions - Rearrangements
Fusion: TCGAC16orf7 ZNF827
Fusion: TCGARPL18 ZNF827
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF827 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF827
dbVarZNF827
ClinVarZNF827
1000_GenomesZNF827 
Exome Variant ServerZNF827
ExAC (Exome Aggregation Consortium)ZNF827 (select the gene name)
Genetic variants : HAPMAP152485
Genomic Variants (DGV)ZNF827 [DGVbeta]
DECIPHERZNF827 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF827 
Mutations
ICGC Data PortalZNF827 
TCGA Data PortalZNF827 
Broad Tumor PortalZNF827
OASIS PortalZNF827 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF827  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF827
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF827
DgiDB (Drug Gene Interaction Database)ZNF827
DoCM (Curated mutations)ZNF827 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF827 (select a term)
intoGenZNF827
Cancer3DZNF827(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF827
Genetic Testing Registry ZNF827
NextProtQ17R98 [Medical]
TSGene152485
GENETestsZNF827
Target ValidationZNF827
Huge Navigator ZNF827 [HugePedia]
snp3D : Map Gene to Disease152485
BioCentury BCIQZNF827
ClinGenZNF827
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152485
Chemical/Pharm GKB GenePA162410714
Clinical trialZNF827
Miscellaneous
canSAR (ICR)ZNF827 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF827
EVEXZNF827
GoPubMedZNF827
iHOPZNF827
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:28 CEST 2017

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