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ZNF829 (zinc finger protein 829)

Identity

Alias_symbol (synonym)DKFZp779O175
Other alias-
HGNC (Hugo) ZNF829
LocusID (NCBI) 374899
Atlas_Id 76432
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36888124 and ends at 36916291 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF829   34032
Cards
Entrez_Gene (NCBI)ZNF829  374899  zinc finger protein 829
Aliases
GeneCards (Weizmann)ZNF829
Ensembl hg19 (Hinxton)ENSG00000185869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185869 [Gene_View]  chr19:36888124-36916291 [Contig_View]  ZNF829 [Vega]
ICGC DataPortalENSG00000185869
TCGA cBioPortalZNF829
AceView (NCBI)ZNF829
Genatlas (Paris)ZNF829
WikiGenes374899
SOURCE (Princeton)ZNF829
Genetics Home Reference (NIH)ZNF829
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF829  -     chr19:36888124-36916291 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF829  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF829 - 19q13.12 [CytoView hg19]  ZNF829 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF829 [Mapview hg19]  ZNF829 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130969 BC107131 BC107132 BX538288 CR936826
RefSeq transcript (Entrez)NM_001037232 NM_001171979
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF829
Cluster EST : UnigeneHs.720312 [ NCBI ]
CGAP (NCI)Hs.720312
Alternative Splicing GalleryENSG00000185869
Gene ExpressionZNF829 [ NCBI-GEO ]   ZNF829 [ EBI - ARRAY_EXPRESS ]   ZNF829 [ SEEK ]   ZNF829 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF829 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374899
GTEX Portal (Tissue expression)ZNF829
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KNS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KNS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KNS6
Splice isoforms : SwissVarQ3KNS6
PhosPhoSitePlusQ3KNS6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF829
DMDM Disease mutations374899
Blocks (Seattle)ZNF829
SuperfamilyQ3KNS6
Human Protein AtlasENSG00000185869
Peptide AtlasQ3KNS6
IPIIPI00792953   IPI00893112   
Protein Interaction databases
DIP (DOE-UCLA)Q3KNS6
IntAct (EBI)Q3KNS6
FunCoupENSG00000185869
BioGRIDZNF829
STRING (EMBL)ZNF829
ZODIACZNF829
Ontologies - Pathways
QuickGOQ3KNS6
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF829
Atlas of Cancer Signalling NetworkZNF829
Wikipedia pathwaysZNF829
Orthology - Evolution
OrthoDB374899
GeneTree (enSembl)ENSG00000185869
Phylogenetic Trees/Animal Genes : TreeFamZNF829
HOVERGENQ3KNS6
HOGENOMQ3KNS6
Homologs : HomoloGeneZNF829
Homology/Alignments : Family Browser (UCSC)ZNF829
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF829 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF829
dbVarZNF829
ClinVarZNF829
1000_GenomesZNF829 
Exome Variant ServerZNF829
ExAC (Exome Aggregation Consortium)ZNF829 (select the gene name)
Genetic variants : HAPMAP374899
Genomic Variants (DGV)ZNF829 [DGVbeta]
DECIPHERZNF829 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF829 
Mutations
ICGC Data PortalZNF829 
TCGA Data PortalZNF829 
Broad Tumor PortalZNF829
OASIS PortalZNF829 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF829  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF829
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF829
DgiDB (Drug Gene Interaction Database)ZNF829
DoCM (Curated mutations)ZNF829 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF829 (select a term)
intoGenZNF829
Cancer3DZNF829(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF829
Genetic Testing Registry ZNF829
NextProtQ3KNS6 [Medical]
TSGene374899
GENETestsZNF829
Target ValidationZNF829
Huge Navigator ZNF829 [HugePedia]
snp3D : Map Gene to Disease374899
BioCentury BCIQZNF829
ClinGenZNF829
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374899
Chemical/Pharm GKB GenePA162410750
Clinical trialZNF829
Miscellaneous
canSAR (ICR)ZNF829 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF829
EVEXZNF829
GoPubMedZNF829
iHOPZNF829
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:51:28 CEST 2017

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