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ZNF83 (zinc finger protein 83)

Identity

Alias_namesZNF816B
zinc finger protein 83 (HPF1)
zinc finger protein 816B
Alias_symbol (synonym)FLJ11015
HPF1
Other alias
HGNC (Hugo) ZNF83
LocusID (NCBI) 55769
Atlas_Id 42884
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 53115618 and ends at 53141644 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF83 (19q13.41) / COL5A1 (9q34.3)ZNF83 (19q13.41) / EXOC3L2 (19q13.32)ZNF83 (19q13.41) / PCDH15 (10q21.1)
ZNF83 (19q13.41) / SAFB (19p13.3)ZNF83 (19q13.41) / TARM1 (19q13.42)ZNF83 19q13.41 / PCDH15 10q21.1
ZNF83 19q13.41 / TARM1 19q13.42

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF83   13158
Cards
Entrez_Gene (NCBI)ZNF83  55769  zinc finger protein 83
AliasesHPF1; ZNF816B
GeneCards (Weizmann)ZNF83
Ensembl hg19 (Hinxton)ENSG00000167766 [Gene_View]  chr19:53115618-53141644 [Contig_View]  ZNF83 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167766 [Gene_View]  chr19:53115618-53141644 [Contig_View]  ZNF83 [Vega]
ICGC DataPortalENSG00000167766
TCGA cBioPortalZNF83
AceView (NCBI)ZNF83
Genatlas (Paris)ZNF83
WikiGenes55769
SOURCE (Princeton)ZNF83
Genetics Home Reference (NIH)ZNF83
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF83  -     chr19:53115618-53141644 -  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF83  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblZNF83 - 19q13.41 [CytoView hg19]  ZNF83 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF83 [Mapview hg19]  ZNF83 [Mapview hg38]
OMIM194558   
Gene and transcription
Genbank (Entrez)AA883993 AB209516 AK001877 AK027518 AK027782
RefSeq transcript (Entrez)NM_001105549 NM_001105550 NM_001105551 NM_001105552 NM_001105553 NM_001105554 NM_001242531 NM_001242538 NM_001277945 NM_001277946 NM_001277947 NM_001277948 NM_001277949 NM_001277951 NM_001277952 NM_018300
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF83
Cluster EST : UnigeneHs.744177 [ NCBI ]
CGAP (NCI)Hs.744177
Alternative Splicing GalleryENSG00000167766
Gene ExpressionZNF83 [ NCBI-GEO ]   ZNF83 [ EBI - ARRAY_EXPRESS ]   ZNF83 [ SEEK ]   ZNF83 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF83 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55769
GTEX Portal (Tissue expression)ZNF83
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51522   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51522  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51522
Splice isoforms : SwissVarP51522
PhosPhoSitePlusP51522
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF83
DMDM Disease mutations55769
Blocks (Seattle)ZNF83
SuperfamilyP51522
Human Protein AtlasENSG00000167766
Peptide AtlasP51522
HPRD01935
IPIIPI00479920   IPI00937015   
Protein Interaction databases
DIP (DOE-UCLA)P51522
IntAct (EBI)P51522
FunCoupENSG00000167766
BioGRIDZNF83
STRING (EMBL)ZNF83
ZODIACZNF83
Ontologies - Pathways
QuickGOP51522
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF83
Atlas of Cancer Signalling NetworkZNF83
Wikipedia pathwaysZNF83
Orthology - Evolution
OrthoDB55769
GeneTree (enSembl)ENSG00000167766
Phylogenetic Trees/Animal Genes : TreeFamZNF83
HOVERGENP51522
HOGENOMP51522
Homologs : HomoloGeneZNF83
Homology/Alignments : Family Browser (UCSC)ZNF83
Gene fusions - Rearrangements
Fusion : MitelmanZNF83/PCDH15 [19q13.41/10q21.1]  
Fusion : MitelmanZNF83/TARM1 [19q13.41/19q13.42]  [t(19;19)(q13;q13)]  
Fusion: TCGAZNF83 19q13.41 PCDH15 10q21.1 BRCA
Fusion: TCGAZNF83 19q13.41 TARM1 19q13.42 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF83 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF83
dbVarZNF83
ClinVarZNF83
1000_GenomesZNF83 
Exome Variant ServerZNF83
ExAC (Exome Aggregation Consortium)ZNF83 (select the gene name)
Genetic variants : HAPMAP55769
Genomic Variants (DGV)ZNF83 [DGVbeta]
DECIPHER (Syndromes)19:53115618-53141644  ENSG00000167766
CONAN: Copy Number AnalysisZNF83 
Mutations
ICGC Data PortalZNF83 
TCGA Data PortalZNF83 
Broad Tumor PortalZNF83
OASIS PortalZNF83 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF83  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF83
BioMutasearch ZNF83
DgiDB (Drug Gene Interaction Database)ZNF83
DoCM (Curated mutations)ZNF83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF83 (select a term)
intoGenZNF83
Cancer3DZNF83(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194558   
Orphanet
MedgenZNF83
Genetic Testing Registry ZNF83
NextProtP51522 [Medical]
TSGene55769
GENETestsZNF83
Huge Navigator ZNF83 [HugePedia]
snp3D : Map Gene to Disease55769
BioCentury BCIQZNF83
ClinGenZNF83
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55769
Chemical/Pharm GKB GenePA37731
Clinical trialZNF83
Miscellaneous
canSAR (ICR)ZNF83 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF83
EVEXZNF83
GoPubMedZNF83
iHOPZNF83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:55 CEST 2017

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