Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF830 (zinc finger protein 830)

Identity

Alias_namesCCDC16
coiled-coil domain containing 16
Alias_symbol (synonym)MGC20398
OMCG1
Other alias
HGNC (Hugo) ZNF830
LocusID (NCBI) 91603
Atlas_Id 55460
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34961530 and ends at 34963186 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF830   28291
Cards
Entrez_Gene (NCBI)ZNF830  91603  zinc finger protein 830
AliasesCCDC16; OMCG1
GeneCards (Weizmann)ZNF830
Ensembl hg19 (Hinxton)ENSG00000198783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198783 [Gene_View]  chr17:34961530-34963186 [Contig_View]  ZNF830 [Vega]
ICGC DataPortalENSG00000198783
TCGA cBioPortalZNF830
AceView (NCBI)ZNF830
Genatlas (Paris)ZNF830
WikiGenes91603
SOURCE (Princeton)ZNF830
Genetics Home Reference (NIH)ZNF830
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF830  -     chr17:34961530-34963186 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF830  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblZNF830 - 17q12 [CytoView hg19]  ZNF830 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIZNF830 [Mapview hg19]  ZNF830 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI866097 AK055707 AK315671 BC002913 BC009044
RefSeq transcript (Entrez)NM_052857
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF830
Cluster EST : UnigeneHs.413678 [ NCBI ]
CGAP (NCI)Hs.413678
Alternative Splicing GalleryENSG00000198783
Gene ExpressionZNF830 [ NCBI-GEO ]   ZNF830 [ EBI - ARRAY_EXPRESS ]   ZNF830 [ SEEK ]   ZNF830 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF830 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91603
GTEX Portal (Tissue expression)ZNF830
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NB3
Splice isoforms : SwissVarQ96NB3
PhosPhoSitePlusQ96NB3
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Znf_U1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZNF830
DMDM Disease mutations91603
Blocks (Seattle)ZNF830
SuperfamilyQ96NB3
Human Protein AtlasENSG00000198783
Peptide AtlasQ96NB3
HPRD14469
IPIIPI00043565   
Protein Interaction databases
DIP (DOE-UCLA)Q96NB3
IntAct (EBI)Q96NB3
FunCoupENSG00000198783
BioGRIDZNF830
STRING (EMBL)ZNF830
ZODIACZNF830
Ontologies - Pathways
QuickGOQ96NB3
Ontology : AmiGOovarian follicle development  preantral ovarian follicle growth  blastocyst growth  nucleic acid binding  protein binding  nucleus  nucleoplasm  chromosome  transcription-coupled nucleotide-excision repair  zinc ion binding  nuclear speck  nuclear DNA replication  mitotic DNA replication checkpoint  negative regulation of apoptotic process  mitotic DNA damage checkpoint  replication fork protection  chromosome organization  cell division  intestinal epithelial structure maintenance  
Ontology : EGO-EBIovarian follicle development  preantral ovarian follicle growth  blastocyst growth  nucleic acid binding  protein binding  nucleus  nucleoplasm  chromosome  transcription-coupled nucleotide-excision repair  zinc ion binding  nuclear speck  nuclear DNA replication  mitotic DNA replication checkpoint  negative regulation of apoptotic process  mitotic DNA damage checkpoint  replication fork protection  chromosome organization  cell division  intestinal epithelial structure maintenance  
NDEx NetworkZNF830
Atlas of Cancer Signalling NetworkZNF830
Wikipedia pathwaysZNF830
Orthology - Evolution
OrthoDB91603
GeneTree (enSembl)ENSG00000198783
Phylogenetic Trees/Animal Genes : TreeFamZNF830
HOVERGENQ96NB3
HOGENOMQ96NB3
Homologs : HomoloGeneZNF830
Homology/Alignments : Family Browser (UCSC)ZNF830
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF830 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF830
dbVarZNF830
ClinVarZNF830
1000_GenomesZNF830 
Exome Variant ServerZNF830
ExAC (Exome Aggregation Consortium)ZNF830 (select the gene name)
Genetic variants : HAPMAP91603
Genomic Variants (DGV)ZNF830 [DGVbeta]
DECIPHERZNF830 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF830 
Mutations
ICGC Data PortalZNF830 
TCGA Data PortalZNF830 
Broad Tumor PortalZNF830
OASIS PortalZNF830 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF830  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF830
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF830
DgiDB (Drug Gene Interaction Database)ZNF830
DoCM (Curated mutations)ZNF830 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF830 (select a term)
intoGenZNF830
Cancer3DZNF830(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF830
Genetic Testing Registry ZNF830
NextProtQ96NB3 [Medical]
TSGene91603
GENETestsZNF830
Target ValidationZNF830
Huge Navigator ZNF830 [HugePedia]
snp3D : Map Gene to Disease91603
BioCentury BCIQZNF830
ClinGenZNF830
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91603
Chemical/Pharm GKB GenePA162410767
Clinical trialZNF830
Miscellaneous
canSAR (ICR)ZNF830 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF830
EVEXZNF830
GoPubMedZNF830
iHOPZNF830
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.