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ZNF835 (zinc finger protein 835)

Identity

Alias_symbol (synonym)BC37295_3
Other alias
HGNC (Hugo) ZNF835
LocusID (NCBI) 90485
Atlas_Id 76435
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56662652 and ends at 56671755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SIPA1L3 (19q13.13) / ZNF835 (19q13.43)ZNF470 (19q13.43) / ZNF835 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF835   34332
Cards
Entrez_Gene (NCBI)ZNF835  90485  zinc finger protein 835
AliasesBC37295_3
GeneCards (Weizmann)ZNF835
Ensembl hg19 (Hinxton)ENSG00000127903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127903 [Gene_View]  chr19:56662652-56671755 [Contig_View]  ZNF835 [Vega]
ICGC DataPortalENSG00000127903
TCGA cBioPortalZNF835
AceView (NCBI)ZNF835
Genatlas (Paris)ZNF835
WikiGenes90485
SOURCE (Princeton)ZNF835
Genetics Home Reference (NIH)ZNF835
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF835  -     chr19:56662652-56671755 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF835  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF835 - 19q13.43 [CytoView hg19]  ZNF835 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF835 [Mapview hg19]  ZNF835 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023017 AK299565 DB536138 DC382896
RefSeq transcript (Entrez)NM_001005850
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF835
Cluster EST : UnigeneHs.458438 [ NCBI ]
CGAP (NCI)Hs.458438
Alternative Splicing GalleryENSG00000127903
Gene ExpressionZNF835 [ NCBI-GEO ]   ZNF835 [ EBI - ARRAY_EXPRESS ]   ZNF835 [ SEEK ]   ZNF835 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF835 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90485
GTEX Portal (Tissue expression)ZNF835
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2P0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2P0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2P0
Splice isoforms : SwissVarQ9Y2P0
PhosPhoSitePlusQ9Y2P0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF835
DMDM Disease mutations90485
Blocks (Seattle)ZNF835
SuperfamilyQ9Y2P0
Human Protein AtlasENSG00000127903
Peptide AtlasQ9Y2P0
HPRD12521
IPIIPI00022738   IPI01015133   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2P0
IntAct (EBI)Q9Y2P0
FunCoupENSG00000127903
BioGRIDZNF835
STRING (EMBL)ZNF835
ZODIACZNF835
Ontologies - Pathways
QuickGOQ9Y2P0
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF835
Atlas of Cancer Signalling NetworkZNF835
Wikipedia pathwaysZNF835
Orthology - Evolution
OrthoDB90485
GeneTree (enSembl)ENSG00000127903
Phylogenetic Trees/Animal Genes : TreeFamZNF835
HOVERGENQ9Y2P0
HOGENOMQ9Y2P0
Homologs : HomoloGeneZNF835
Homology/Alignments : Family Browser (UCSC)ZNF835
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF835 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF835
dbVarZNF835
ClinVarZNF835
1000_GenomesZNF835 
Exome Variant ServerZNF835
ExAC (Exome Aggregation Consortium)ZNF835 (select the gene name)
Genetic variants : HAPMAP90485
Genomic Variants (DGV)ZNF835 [DGVbeta]
DECIPHERZNF835 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF835 
Mutations
ICGC Data PortalZNF835 
TCGA Data PortalZNF835 
Broad Tumor PortalZNF835
OASIS PortalZNF835 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF835  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF835
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF835
DgiDB (Drug Gene Interaction Database)ZNF835
DoCM (Curated mutations)ZNF835 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF835 (select a term)
intoGenZNF835
Cancer3DZNF835(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF835
Genetic Testing Registry ZNF835
NextProtQ9Y2P0 [Medical]
TSGene90485
GENETestsZNF835
Target ValidationZNF835
Huge Navigator ZNF835 [HugePedia]
snp3D : Map Gene to Disease90485
BioCentury BCIQZNF835
ClinGenZNF835
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90485
Chemical/Pharm GKB GenePA162410787
Clinical trialZNF835
Miscellaneous
canSAR (ICR)ZNF835 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF835
EVEXZNF835
GoPubMedZNF835
iHOPZNF835
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:25 CEST 2017

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